Paper · 2025 · The Science of The Total Environment

Can silicate types regulate plant defense and rhizospheric microbiome diversity differently during heat stress conditions?

Waqar Ahmad; Ram Ray; Abdul Latif Khan

14
claims
28
verbatim quotes
1
citations
3
research areas
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Open access · cc-by-nc-nd

Abstract

Silicates (Si) improve plant growth; however, how different types of silicate sources influence plant growth and rhizosphere microbiome remains underexplored. We compare two Si types (pure and bioavailable silicic acid (Si) and mineral magnesium silicate (MgSi)) applied to the soybean (Glycine max L.) rhizosphere to determine whether two silicate types (Si-types) differently impact plant growth, defense responses, and microbiome diversity and function during heat stress. Under heat stress, Si-type treatments improved biomass (86 % with Si and 82 % with MgSi), reduced H₂O₂ (26 % phyllosphere; 33 % rhizosphere), and enhanced β-glucosidase activity (2.6-fold rhizosphere) compared to heat-only treatment and increased Proteobacteria relative abundance from ∼65 % (heat-only) to ∼74 % in Si-type-treated rhizospheric soil. Si-types showed downregulation of heat shock transcription factors, suggesting regulatory defense effects during heat stress. Metagenome-assembled genomes (MAGs) analysis revealed significant bacterial shifts across the Si-treatments, with Proteobacteria and Bacteroidetes being the dominant phyla in the rhizospheric soil. Under heat stress, the core microbiome comprised 14 rhizosphere genera (including Pelomonas, Achromobacter, Paracoccus, Nocardioides), whereas Pelomonas was the sole core root genus, and Pelomonas puraquae core species in both compartments. MAGs analysis revealed Si-based shifts in microbial metabolic pathways and enrichment of auxin biosynthesis in Si-treated roots during heat stress. Because MgSi supplies both Mg and Si, effects observed with MgSi are interpreted as combined Si + Mg effects. In conclusion, both Si-types caused shifts in microbiome diversity and function, and impacted plant growth and defense responses under heat stress, providing a foundation for improving thermotolerance in plants.

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Claims 14

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicic acid raised biomass by 86% under heat stress.

Taxon
soybeanGlycine maxt0
Treatment
Sie0
Outcome
biomasse0
Direction
improvede0
Value
86 %e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Under heat stress, Si-type treatments improved biomass (86 % with Si and 82 % with MgSi)”

✓ located verbatim in the source · abstract, characters 476–564 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Magnesium silicate raised biomass by 82% under heat stress.

Taxon
soybeanGlycine maxt0
Treatment
MgSie0
Outcome
biomasse0
Direction
improvede0
Value
82 %e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Under heat stress, Si-type treatments improved biomass (86 % with Si and 82 % with MgSi)”

✓ located verbatim in the source · abstract, characters 476–564 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicate treatments reduced phyllosphere H₂O₂ by 26%.

Taxon
soybeanGlycine maxt0
Organ / stage
phyllospheree0
Outcome
H₂O₂e0
Direction
reducede0
Value
26 %e0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“reduced H₂O₂ (26 % phyllosphere; 33 % rhizosphere)”

✓ located verbatim in the source · abstract, characters 566–616 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicate treatments reduced rhizosphere H₂O₂ by 33%.

Taxon
soybeanGlycine maxt0
Organ / stage
rhizospheree0
Outcome
H₂O₂e0
Direction
reducede0
Value
33 %e0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“reduced H₂O₂ (26 % phyllosphere; 33 % rhizosphere)”

✓ located verbatim in the source · abstract, characters 566–616 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Silicates enhanced rhizosphere β-glucosidase activity 2.6 fold.

Taxon
soybeanGlycine maxt0
Outcome
β-glucosidase activitye0
Direction
enhancede0
Value
2.6-folde0

Not reportedTreatmentComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“enhanced β-glucosidase activity (2.6-fold rhizosphere)”

✓ located verbatim in the source · abstract, characters 622–676 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Silicates raised rhizospheric Proteobacteria abundance from about 65% to about 74%.

Taxon
soybeanGlycine maxt0
Treatment
Si-type-treatede0
Interactor
ProteobacteriaPseudomonadotae0other
Outcome
Proteobacteria relative abundancee0
Direction
increasede0
Value
∼74 %e0
Qualifier
∼65 %e0
Comparator
heat-onlye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“increased Proteobacteria relative abundance from ∼65 % (heat-only) to ∼74 % in Si-type-treated rhizospheric soil”

✓ located verbatim in the source · abstract, characters 713–825 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Silicate types downregulated heat shock transcription factors.

Taxon
soybeanGlycine maxt0
Gene
heat shock transcription factorse0
Outcome
heat shock transcription factorse0
Direction
downregulatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Si-types showed downregulation of heat shock transcription factors”

✓ located verbatim in the source · abstract, characters 827–893 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Si treatments shifted rhizosphere bacterial composition significantly.

Taxon
soybeanGlycine maxt0
Treatment
Si-treatmentse0
Outcome
bacterial shiftse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“significant bacterial shifts across the Si-treatments”

✓ located verbatim in the source · abstract, characters 1007–1060 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Proteobacteria and Bacteroidetes dominated rhizosphere soil.

Taxon
soybeanGlycine maxt0
Interactor
ProteobacteriaPseudomonadotae0other
Second interactor
BacteroidetesBacteroidotae0other
Outcome
dominant phylae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Proteobacteria and Bacteroidetes being the dominant phyla in the rhizospheric soil”

✓ located verbatim in the source · abstract, characters 1067–1149 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The heat stress rhizosphere core microbiome had 14 genera.

Taxon
soybeanGlycine maxt0
Outcome
rhizosphere generae0
Value
14e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Under heat stress, the core microbiome comprised 14 rhizosphere genera”

✓ located verbatim in the source · abstract, characters 1151–1221 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pelomonas was the only core root genus.

Taxon
soybeanGlycine maxt0
Interactor
PelomonasRoseatelese0other
Outcome
sole core root genuse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Pelomonas was the sole core root genus”

✓ located verbatim in the source · abstract, characters 1294–1332 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pelomonas puraquae was core in both compartments.

Taxon
soybeanGlycine maxt0
Interactor
Pelomonas puraquaeRoseateles puraquaee0other
Outcome
core species in both compartmentse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Pelomonas puraquae core species in both compartments”

✓ located verbatim in the source · abstract, characters 1338–1390 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Silicate treatments shifted microbial metabolic pathways.

Taxon
soybeanGlycine maxt0
Treatment
Si-basede0
Outcome
microbial metabolic pathwayse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Si-based shifts in microbial metabolic pathways”

✓ located verbatim in the source · abstract, characters 1415–1462 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Silicate treated roots were enriched for auxin biosynthesis under heat stress.

Taxon
soybeanGlycine maxt0
Organ / stage
rootse0
Outcome
auxin biosynthesise0
Direction
enrichmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“enrichment of auxin biosynthesis in Si-treated roots during heat stress”

✓ located verbatim in the source · abstract, characters 1467–1538 · show in text ↑
t0

“the soybean (Glycine max L.) rhizosphere”

✓ located verbatim in the source · abstract, characters 274–314 · show in text ↑

silicon atom · growth · Glycine max (soybean)Results differ

28 papers: 24 positive, 4 negative or no effect

23 papers in the same direction as this paper · 4 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

24 papers more in this group

See all 28 papers →

magnesium atom · growth · Glycine max (soybean)Positive and negative results

29 papers: 21 positive, 8 negative or no effect

20 papers in the same direction as this paper · 8 in the opposite direction

  1. no effect
  2. negative
  3. negative

25 papers more in this group

See all 29 papers →

silicate(4-) · growth · Glycine max (soybean)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.