Paper · 2026 · Plants

Tea Cultivar Genotype Shapes Rhizosphere Microbiome Assembly Through Metabolic Differentiation

Lingfei Ji; Xiwen Fang; Shengxian Chen; et al.

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Open access · cc-by

Abstract

) to investigate how cultivar-specific variation influences rhizosphere microbial communities and their assembly processes. Rhizosphere soil microbiomes (bacterial and fungal communities) and metabolomes were characterized using 16S rRNA and ITS2 amplicon sequencing combined with untargeted metabolomics. Significant differences in rhizosphere metabolite composition, primarily organic acids, fatty acids, and carbohydrates, were observed among cultivars, which corresponded to distinct bacterial and fungal community structures. Redundancy analysis (RDA) revealed that rhizosphere metabolites explained 19.87% of bacterial and 21.63% of fungal community compositional variation, second only to soil physicochemical properties. Neutral community model and modified stochasticity ratio analyses indicated that microbial assembly across cultivars was predominantly deterministic, and rhizosphere metabolite profiles were strongly correlated with microbial community structure. Notably, arbuscular mycorrhizal fungi made up about 11% of the fungal communities in minimally fertilized pot systems, contrasting sharply with their near-absence in conventionally managed systems plantations. These findings demonstrate that tea cultivar genotype significantly shapes rhizosphere microbiome assembly through metabolic differentiation, providing a theoretical foundation for integrating microbiome considerations into tea breeding programs and developing cultivar-specific management strategies.

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Claims 11

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Rhizosphere metabolite composition differed significantly among tea cultivars.

Taxon
Teat0
Material
cultivarse0
Outcome
rhizosphere metabolite compositione0
Direction
differencese0

Verbatim

e0

“Significant differences in rhizosphere metabolite composition, primarily organic acids, fatty acids, and carbohydrates, were observed among cultivars”

✓ located verbatim in the source · abstract, characters 306–455 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacterial community structures differed among cultivars.

Taxon
Teat0
Interactor
bacteriale0symbiont
Outcome
distinct bacterial and fungal community structurese0
Direction
distincte0

Verbatim

e0

“which corresponded to distinct bacterial and fungal community structures”

✓ located verbatim in the source · abstract, characters 457–529 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fungal community structures differed among cultivars.

Taxon
Teat0
Interactor
fungale0symbiont
Outcome
fungal community structurese0
Direction
distincte0

Verbatim

e0

“which corresponded to distinct bacterial and fungal community structures”

✓ located verbatim in the source · abstract, characters 457–529 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Rhizosphere metabolites explained 19.87% of bacterial community composition variation.

Taxon
Teat0
Interactor
bacteriale0symbiont
Compound
rhizosphere metabolitese0
Outcome
bacterial and 21.63% of fungal community compositional variatione0
Value
19.87%e0

Not reportedDirection

Verbatim

e0

“rhizosphere metabolites explained 19.87% of bacterial and 21.63% of fungal community compositional variation”

✓ located verbatim in the source · abstract, characters 571–679 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Rhizosphere metabolites explained 21.63% of fungal community composition variation.

Taxon
Teat0
Interactor
fungale0symbiont
Compound
rhizosphere metabolitese0
Outcome
fungal community compositional variatione0
Value
21.63%e0

Not reportedDirection

Verbatim

e0

“rhizosphere metabolites explained 19.87% of bacterial and 21.63% of fungal community compositional variation”

✓ located verbatim in the source · abstract, characters 571–679 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Microbial assembly across cultivars was predominantly deterministic.

Taxon
Teat0
Material
cultivarse0
Interactor
microbiale0symbiont
Outcome
microbial assemblye0

Verbatim

e0

“microbial assembly across cultivars was predominantly deterministic”

✓ located verbatim in the source · abstract, characters 810–877 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Rhizosphere metabolite profiles were strongly correlated with microbial community structure.

Taxon
Teat0
Interactor
microbiale0symbiont
Compound
rhizosphere metabolite profilese0
Outcome
microbial community structuree0

Not reportedDirection

Verbatim

e0

“rhizosphere metabolite profiles were strongly correlated with microbial community structure”

✓ located verbatim in the source · abstract, characters 883–974 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Arbuscular mycorrhizal fungi made up about 11% of fungi in minimally fertilized pot systems.

Taxon
Teat0
Interactor
arbuscular mycorrhizal fungie0symbiont
Outcome
arbuscular mycorrhizal fungie0
Value
about 11%e0
Setting
minimally fertilized pot systemse0

Verbatim

e0

“arbuscular mycorrhizal fungi made up about 11% of the fungal communities in minimally fertilized pot systems”

✓ located verbatim in the source · abstract, characters 985–1093 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Arbuscular mycorrhizal fungi were nearly absent in conventionally managed plantations.

Taxon
Teat0
Interactor
arbuscular mycorrhizal fungie0symbiont
Outcome
near-absencee0
Setting
conventionally managed systems plantationse0

Verbatim

e0

“arbuscular mycorrhizal fungi made up about 11% of the fungal communities in minimally fertilized pot systems, contrasting sharply with their near-absence in conventionally managed systems plantations”

✓ located verbatim in the source · abstract, characters 985–1184 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑
Mechanismauthor interpretationoriginal resultsignificant (as stated)measured

Claim · model-written summary

The authors concluded that tea cultivar genotype shapes rhizosphere microbiome assembly through metabolic differentiation.

Taxon
teae0
Material
cultivar genotypee0
Interactor
microbiomee0symbiont
Outcome
rhizosphere microbiome assemblye0
Qualifier
metabolic differentiatione0

Verbatim

e0

“tea cultivar genotype significantly shapes rhizosphere microbiome assembly through metabolic differentiation”

✓ located verbatim in the source · abstract, characters 1218–1326 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors propose incorporating microbiome considerations into tea breeding and cultivar-specific management.

Taxon
Teat0
Outcome
integrating microbiome considerations into tea breeding programs and developing cultivar-specific management strategiese0

Verbatim

e0

“integrating microbiome considerations into tea breeding programs and developing cultivar-specific management strategies”

✓ located verbatim in the source · abstract, characters 1367–1486 · show in text ↑
t0

“Tea”

✓ located verbatim in the source · title, characters 0–3 · show in text ↑