Paper · 2026 · Genomics

Comparative transcriptome and physiological analyses of the Polygonatum odoratum (Mill.) Druce rhizome responses to continuous cropping

Gen Pan; Jian Jin; Hao Liu; et al.

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verbatim quotes
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citations
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Open access · cc-by-nc-nd

Abstract

Polygonatum odoratum, a valuable medicinal herb, faces severe cultivation constraints due to continuous cropping (CC) obstacles, yet the physiological and molecular mechanisms in its rhizome remain unclear. This study integrates physiological and transcriptomic analyses comparing CC and first-cropping plants. Under CC stress, rhizomes exhibited reduced diameter, root length, and root number, along with decreased antioxidant enzyme activities and polysaccharide content, but increased malondialdehyde levels and 3 types of phenolic acids. RNA-seq identified 3357 upregulated and 1215 downregulated DEGs. KEGG analysis revealed downregulation in plant hormone signal transduction, particularly in IAA-related genes, while the JA, CTK, and ABA pathways, along with key carbohydrate metabolism processes, were upregulated. Moreover, exogenous NAA application promotes the root growth in the rhizome of P. odoratum. These results uncover hormone signaling reprogramming and metabolic shifts underlying CC responses, offering novel insights and a theoretical basis for mitigating cropping obstacles in medicinal plants.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc-nd. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Continuous cropping reduced rhizome diameter, root length and root number.

Organ / stage
rhizomese0
Treatment
CC stresse0
Outcome
diameter, root length, and root numbere0
Direction
reducede0

Not reportedTaxonComparator

Verbatim

e0

“Under CC stress, rhizomes exhibited reduced diameter, root length, and root number”

✓ located verbatim in the source · abstract, characters 311–393 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Continuous cropping decreased antioxidant enzyme activities and polysaccharide content.

Outcome
antioxidant enzyme activities and polysaccharide contente0
Direction
decreasede0

Not reportedTaxonTreatmentComparator

Verbatim

e0

“decreased antioxidant enzyme activities and polysaccharide content”

✓ located verbatim in the source · abstract, characters 406–472 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Continuous cropping increased malondialdehyde.

Outcome
malondialdehyde levelse0
Direction
increasede0

Not reportedTaxonTreatmentComparator

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e0

“increased malondialdehyde levels and 3 types of phenolic acids”

✓ located verbatim in the source · abstract, characters 478–540 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Continuous cropping increased three phenolic acid types.

Outcome
3 types of phenolic acidse0
Direction
increasede0

Not reportedTaxonTreatmentComparator

Verbatim

e0

“increased malondialdehyde levels and 3 types of phenolic acids”

✓ located verbatim in the source · abstract, characters 478–540 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RNA sequencing identified 3357 upregulated DEGs.

Outcome
DEGse0
Direction
upregulatede0
Value
3357e0

Not reportedTaxon

Verbatim

e0

“RNA-seq identified 3357 upregulated and 1215 downregulated DEGs”

✓ located verbatim in the source · abstract, characters 542–605 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RNA sequencing identified 1215 downregulated DEGs.

Outcome
downregulated DEGse0
Direction
downregulatede0
Value
1215e0

Not reportedTaxon

Verbatim

e0

“RNA-seq identified 3357 upregulated and 1215 downregulated DEGs”

✓ located verbatim in the source · abstract, characters 542–605 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Plant hormone signal transduction and IAA related genes were downregulated.

Gene
IAA-related genese0
Outcome
plant hormone signal transductione0
Direction
downregulatione0

Not reportedTaxon

Verbatim

e0

“downregulation in plant hormone signal transduction, particularly in IAA-related genes”

✓ located verbatim in the source · abstract, characters 630–716 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

JA, CTK, ABA and carbohydrate metabolism pathways were upregulated.

Outcome
JA, CTK, and ABA pathwayse0
Direction
upregulatede0

Not reportedTaxon

Verbatim

e0

“the JA, CTK, and ABA pathways, along with key carbohydrate metabolism processes, were upregulated”

✓ located verbatim in the source · abstract, characters 724–821 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Exogenous NAA promoted root growth in rhizomes.

Taxon
P. odoratumPolygonatum odoratume0
Organ / stage
rhizomee0
Treatment
exogenous NAA applicatione0
Outcome
root growthe0
Direction
promotese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Polygonatum odoratum
Polygonatum odoratum · TaxonMyrabella · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“exogenous NAA application promotes the root growth in the rhizome of P. odoratum”

✓ located verbatim in the source · abstract, characters 833–913 · show in text ↑