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Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Down-regulation of stomatal development genes correlated with lower stomatal density under boron deficiency.

Taxon
Pisum sativumLathyrus oleraceust0
Gene
MUTE and TOO MANY MOUTHSe0
Outcome
stomatal densitye0
Direction
decreasee0

Verbatim

e0

“the down-regulation of stomatal development genes in guard cells, including homologs of MUTE and TOO MANY MOUTHS, correlated with a decrease in stomatal density under B deficiency.”

✓ located verbatim in the source · abstract, characters 676–856
t0

“shoot apices of Pisum sativum grown under boron (B) deficiency”

✓ located verbatim in the source · abstract, characters 215–277

Title

Single‐cell transcriptomic analysis of pea shoot development and cell‐type‐specific responses to boron deficiency

Xi Chen; Yanqi Ru; Hirokazu Takahashi; et al. The Plant Journal 2023. doi:10.1111/tpj.16487

Other claims from this paper (7)
Associationobservedoriginal resultmeasured

Claim · model-written summary

TE abundance shows a consistent negative correlation with gene density in A. thaliana.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
gene densitye2
Outcome
TE abundancee2
Direction
decreaseinferrede2

Verbatim

e0

“the genome sequence of Arabidopsis thaliana”

✓ located verbatim in the source · abstract, characters 334–377
e2

“a consistent negative correlation between gene density and TE abundance”

✓ located verbatim in the source · abstract, characters 711–782

Title

Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana

Stephen I. Wright; Newton Agrawal; Thomas E. Bureau Genome Research 2003. doi:10.1101/gr.1281503

Other claims from this paper (4)
Associationobservedoriginal resultmeasured

Claim · model-written summary

In Arabidopsis ecotypes, expression of epi-alleles at these loci decreases as methylation density increases, mainly within the transcribed region.

Taxon
ArabidopsisArabidopsise3
Material
Arabidopsis ecotypese3
Outcome
expression patternse3
Direction
decreaseinferrede3
Qualifier
with methylation densitye3

Verbatim

e3

“Arabidopsis ecotypes contain distinct epi-alleles of these loci with expression patterns that inversely correlate with methylation density, predominantly within the transcribed region”

✓ located verbatim in the source · abstract, characters 1223–1406

Title

Transmission of Epi-Alleles with MET1-Dependent Dense Methylation in Arabidopsis thaliana

Michael Watson; Emily Hawkes; Peter Meyer PLoS ONE 2014. doi:10.1371/journal.pone.0105338

Other claims from this paper (6)
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

CAB transcripts decreased in abundance during grapevine leaf senescence.

Taxon
Vitis viniferaVitis viniferae0
Material
'Pinot noir'e0
Organ / stage
leaf senescencee3
Gene
chlorophyll a/b binding (CAB) genese2
Outcome
CAB transcriptse1
Direction
decreasee1

Verbatim

e0

“Vitis vinifera 'Pinot noir' leaves 7, 88 and 131 days-old”

✓ located verbatim in the source · abstract, characters 534–591
e1

“While CAB transcripts decrease in their abundance, cysteine-proteinases are activated”

✓ located verbatim in the source · abstract, characters 853–938
e2

“chlorophyll a/b binding (CAB) genes and the cysteine-proteinases genes”

✓ located verbatim in the source · abstract, characters 781–851
e3

“At this stage of leaf senescence”

✓ located verbatim in the source · abstract, characters 702–734

Title

GENE EXPRESSION PROFILING DURING GRAPE LEAF DEVELOPMENT AND SENESCENCE BY HIGH DENSITY FILTERS

C. Moser; M. Pindo; M. Bertamini; et al. Acta Horticulturae 2005. doi:10.17660/actahortic.2005.689.52

Other claims from this paper (2)
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Nodulation module activation appeared linked to reduced NodD2 expression.

Taxon
SoybeanGlycine maxt0
Interactor
Bradyrhizobium diazoefficiensBradyrhizobium diazoefficienst0symbiont
Gene
NodD2e0
Outcome
expression of NodD2e0
Direction
decreasee0
Qualifier
appeared to be linkede0

Verbatim

e0

“The former appeared to be linked to a significant decrease in the expression of NodD2, a key cell-density-dependent repressor of nodulation genes”

✓ located verbatim in the source · abstract, characters 1006–1151
t0

“Soybean-mediated suppression of BjaI/BjaR 1 quorum sensing in Bradyrhizobium diazoefficiens”

✓ located verbatim in the source · title, characters 0–91

Title

Soybean-mediated suppression of BjaI/BjaR 1 quorum sensing in Bradyrhizobium diazoefficiens impacts symbiotic nitrogen fixation

Fang Han; Huiquan Li; Ermeng Lyu; et al. Applied and Environmental Microbiology 2024. doi:10.1128/aem.01374-23

Other claims from this paper (9)
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Cysteine-proteinase genes were activated during grapevine leaf senescence.

Taxon
Vitis viniferaVitis viniferae0
Organ / stage
leaf senescencee3
Gene
cysteine-proteinases genese2
Outcome
cysteine-proteinasese1
Direction
activatede1

Verbatim

e0

“Vitis vinifera 'Pinot noir' leaves 7, 88 and 131 days-old”

✓ located verbatim in the source · abstract, characters 534–591
e1

“While CAB transcripts decrease in their abundance, cysteine-proteinases are activated”

✓ located verbatim in the source · abstract, characters 853–938
e2

“chlorophyll a/b binding (CAB) genes and the cysteine-proteinases genes”

✓ located verbatim in the source · abstract, characters 781–851
e3

“At this stage of leaf senescence”

✓ located verbatim in the source · abstract, characters 702–734

Title

GENE EXPRESSION PROFILING DURING GRAPE LEAF DEVELOPMENT AND SENESCENCE BY HIGH DENSITY FILTERS

C. Moser; M. Pindo; M. Bertamini; et al. Acta Horticulturae 2005. doi:10.17660/actahortic.2005.689.52

Other claims from this paper (2)
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Chromosomal recombination rate was significantly negatively correlated with the number of tandem duplicated genes per chromosome (r = -0.72).

Taxon
EucalyptusEucalyptust0
Gene
tandem duplicated genese0
Outcome
chromosomal recombination ratee0
Direction
decreaseinferrede0
Value
r = -0.72e0

Verbatim

e0

“Variation in chromosomal recombination rate was significantly correlated with gene density (r = 0.94), GC content (r = 0.90), and the number of tandem duplicated genes (r = -0.72) per chromosome”

✓ located verbatim in the source · abstract, characters 1261–1455
t0

“recombination rate in Eucalyptus”

✓ located verbatim in the source · title, characters 25–57

Title

Genome-wide variation in recombination rate in Eucalyptus

Jean-Marc Gion; Corey J. Hudson; Isabelle Lesur; et al. BMC Genomics 2016. doi:10.1186/s12864-016-2884-y

Other claims from this paper (10)
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Abundance of a protein with sucrose synthase was significantly higher in genotype 1301 by proteomic analysis.

Taxon
rapeseed (Brassica napus L.)Brassica napuse0
Material
1301 genotypee5
Gene
sucrose synthasee5
Outcome
abundance of a protein with sucrose synthasee5
Direction
increasee5

Not reportedValue

Verbatim

e5

“In contrast, sucrose synthase (SuSy) activity appeared to decrease in both genotypes, but a significant increase in abundance of a protein with sucrose synthase was found in the 1301 genotype by proteomic analysis”

✓ located verbatim in the source · abstract, characters 1577–1790
e0

“Leaf carbon metabolism plays an important role in the biomass accumulation of rapeseed (Brassica napus L.)”

✓ located verbatim in the source · abstract, characters 63–169

Title

Response of leaf carbon metabolism and dry matter accumulation to density and row spacing in two rapeseed (Brassica napus L.) genotypes with differing plant architectures

Jie Kuai; Xiaoyong Li; Jianli Ji; et al. The Crop Journal 2021. doi:10.1016/j.cj.2021.10.006

Other claims from this paper (15)

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