Search claims · PlantClaims

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Enrichment decreased potato host genomic reads by about 1.7-fold.

Taxon: potatoSolanum tuberosume1
Outcome: host genomic readse0
Direction: decreasee0
Value: ∼1.7-folde0
Comparator: DNA extracted from the same sample without density gradient centrifugation enrichmente0

Verbatim

e0
“a ∼1.7-fold decrease in host genomic reads compared to the DNA extracted from the same sample without density gradient centrifugation enrichment.”
✓ located verbatim in the source · abstract, characters 563–708

e1
“potato infected with a ‘ Candidatus Phytoplasma australasia’-related strain”
✓ located verbatim in the source · abstract, characters 429–504

Title

Iodixanol density gradients as an effective phytoplasma enrichment approach to improve genome sequencing

Bianca Rodrigues Jardim; Lucy T. T. Tran-Nguyen; Cherie Gambley; et al. Frontiers in Microbiology 2022. doi:10.3389/fmicb.2022.937648

Other claims from this paper (9)

Method / resource Enrichment increased phytoplasma HTS reads from infected potato by about 14-fold.
Method / resource Enrichment increased potato phytoplasma assembly size by about 15,000 bp.
Method / resource Enrichment increased potato phytoplasma assembly N50 by about 14,800 bp.
Method / resource Enrichment produced about threefold more phytoplasma reads in capsicum.
Method / resource Enrichment produced about twofold fewer host genomic reads in capsicum.
Method / resource Enrichment increased capsicum phytoplasma genome assembly size by about 137,000 bp.
Method / resource Enrichment increased capsicum phytoplasma assembly N50 by about 4,000 bp.
Method / resource Phytoplasmas from potato and capsicum were enriched at a density of 1.049–1.058 g/ml.
Method / resource The authors provide two contiguous phytoplasma reference genomes from infected Solanaceae hosts.

Associationobservedoriginal resultmeasured

Claim · model-written summary

In Arabidopsis ecotypes, expression of epi-alleles at these loci decreases as methylation density increases, mainly within the transcribed region.

Taxon: ArabidopsisArabidopsise3
Material: Arabidopsis ecotypese3
Outcome: expression patternse3
Direction: decreaseinferrede3
Qualifier: with methylation densitye3

Verbatim

e3
“Arabidopsis ecotypes contain distinct epi-alleles of these loci with expression patterns that inversely correlate with methylation density, predominantly within the transcribed region”
✓ located verbatim in the source · abstract, characters 1223–1406

Title

Transmission of Epi-Alleles with MET1-Dependent Dense Methylation in Arabidopsis thaliana

Michael Watson; Emily Hawkes; Peter Meyer PLoS ONE 2014. doi:10.1371/journal.pone.0105338

Other claims from this paper (6)

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

CRISPR/Cas9 knockout of STOMAGEN in rice yielded lines with about 25% of wild-type stomatal density.

Taxon: riceOryza sativat0
Treatment: CRISPR/Cas9-mediated knockoutse1
Gene: STOMAGENe1
Outcome: stomatal densitye1
Direction: decreaseinferrede1
Value: ∼25%e1
Comparator: wild-typee1

Verbatim

e1
“CRISPR/Cas9-mediated knockouts of the positive regulator of stomatal development STOMAGEN and its paralog EPIDERMAL PATTERNING FACTOR-LIKE10 (EPFL10) yielded lines with ∼25% and 80% of wild-type stomatal density, respectively”
✓ located verbatim in the source · abstract, characters 361–586

t0
“rice”
✓ located verbatim in the source · title, characters 22–26

Title

Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance

Nicholas G Karavolias; Dhruv Patel-Tupper; Kyungyong Seong; et al. PLANT PHYSIOLOGY 2023. doi:10.1093/plphys/kiad183

Other claims from this paper (5)

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

CRISPR/Cas9 knockout of EPFL10 in rice yielded lines with about 80% of wild-type stomatal density.

Taxon: riceOryza sativat0
Treatment: CRISPR/Cas9-mediated knockoutse1
Gene: EPFL10e1
Outcome: stomatal densitye1
Direction: decreaseinferrede1
Value: 80%e1
Comparator: wild-typee1

Verbatim

e1
“CRISPR/Cas9-mediated knockouts of the positive regulator of stomatal development STOMAGEN and its paralog EPIDERMAL PATTERNING FACTOR-LIKE10 (EPFL10) yielded lines with ∼25% and 80% of wild-type stomatal density, respectively”
✓ located verbatim in the source · abstract, characters 361–586

t0
“rice”
✓ located verbatim in the source · title, characters 22–26

Title

Paralog editing tunes rice stomatal density to maintain photosynthesis and improve drought tolerance

Nicholas G Karavolias; Dhruv Patel-Tupper; Kyungyong Seong; et al. PLANT PHYSIOLOGY 2023. doi:10.1093/plphys/kiad183

Other claims from this paper (5)

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Brefeldin A inhibition of exocytosis strongly decreased SEC3A puncta density.

Taxon: ArabidopsisArabidopsist0
Treatment: treatment with brefeldin Ae0
Outcome: density of punctae0
Direction: decreases stronglye0

Not reportedComparator

Verbatim

t0
“Arabidopsis”
✓ located verbatim in the source · title, characters 4–15

e0
“The density of puncta does not decrease after growth termination of these cells, but decreases strongly when exocytosis is inhibited by treatment with brefeldin A.”
✓ located verbatim in the source · abstract, characters 935–1098

Title

The Arabidopsis exocyst subunit SEC3A is essential for embryo development and accumulates in transient puncta at the plasma membrane

Ying Zhang; Richard Immink; Chun‐Ming Liu; et al. New Phytologist 2013. doi:10.1111/nph.12236

Other claims from this paper (7)

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

OsYDA1 overexpression significantly decreased water-loss rate in Arabidopsis.

Taxon: ArabidopsisArabidopsise0
Treatment: Overexpressione0
Gene: OsYDA1e1
Outcome: water-loss ratee0
Direction: decreasee0

Not reportedComparator

Verbatim

e0
“Overexpression of either of these genes in Arabidopsis resulted in a significant decrease in stomatal density and water-loss rate.”
✓ located verbatim in the source · abstract, characters 555–685

e1
“OsYDA1 and OsYDA2”
✓ located verbatim in the source · abstract, characters 537–554

Title

Characterization of Rice OsYDA Gene in Regulating Stomatal Development

Zheng Guo 2011

Other claims from this paper (6)

Observation Two rice AtYDA orthologs, OsYDA1 and OsYDA2, were cloned.
Intervention effect OsYDA1 overexpression significantly decreased stomatal density in Arabidopsis.
Intervention effect OsYDA2 overexpression significantly decreased stomatal density in Arabidopsis.
Intervention effect OsYDA2 overexpression significantly decreased water-loss rate in Arabidopsis.
Intervention effect Arabidopsis expressing ΔN-OsYDA1 showed a dramatically reduced stomatal index.
Intervention effect Arabidopsis expressing ΔN-OsYDA2 showed a dramatically reduced stomatal index.

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

OsYDA2 overexpression significantly decreased water-loss rate in Arabidopsis.

Taxon: ArabidopsisArabidopsise0
Treatment: Overexpressione0
Gene: OsYDA2e1
Outcome: water-loss ratee0
Direction: decreasee0

Not reportedComparator

Verbatim

e0
“Overexpression of either of these genes in Arabidopsis resulted in a significant decrease in stomatal density and water-loss rate.”
✓ located verbatim in the source · abstract, characters 555–685

e1
“OsYDA1 and OsYDA2”
✓ located verbatim in the source · abstract, characters 537–554

Title

Characterization of Rice OsYDA Gene in Regulating Stomatal Development

Zheng Guo 2011

Other claims from this paper (6)

Observation Two rice AtYDA orthologs, OsYDA1 and OsYDA2, were cloned.
Intervention effect OsYDA1 overexpression significantly decreased stomatal density in Arabidopsis.
Intervention effect OsYDA2 overexpression significantly decreased stomatal density in Arabidopsis.
Intervention effect OsYDA1 overexpression significantly decreased water-loss rate in Arabidopsis.
Intervention effect Arabidopsis expressing ΔN-OsYDA1 showed a dramatically reduced stomatal index.
Intervention effect Arabidopsis expressing ΔN-OsYDA2 showed a dramatically reduced stomatal index.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Scaffold ordering with two high-density genetic maps increased faba bean chromosome length to 14.28 Mbp

Taxon: faba beanVicia fabat0
Outcome: lengthe1
Direction: increasede1
Value: 14.28 Mbpe1

Verbatim

t0
“faba bean”
✓ located verbatim in the source · title, characters 13–22

e1
“Two high-density genetic maps were used to conduct the scaffold ordering and orientation of faba bean, culminating in an increased length (i.e., 14.28 Mbp) of chromosomes and a decrease in the number of scaffolds by 45”
✓ located verbatim in the source · abstract, characters 223–441

Title

High-quality faba bean reference transcripts generated using PacBio and Illumina RNA-seq data

Na Zhao; Enqiang Zhou; Yamei Miao; et al. Scientific Data 2024. doi:10.1038/s41597-024-03204-4

Other claims from this paper (9)

Method / resource Scaffold ordering decreased the number of faba bean scaffolds by 45
Method / resource PacBio and Illumina RNA-seq datasets from 37 samples allowed identification and correction of 121,606 transcripts
Method / resource RNA-seq data predicted 15,640 alternative splicing events in faba bean
Method / resource RNA-seq data predicted 2,148 lncRNAs in faba bean
Method / resource RNA-seq data predicted 1,752 fusion transcripts in faba bean
Method / resource Compared with the reference genome, 38,850 new faba bean genes were identified
Method / resource Compared with the reference genome, 56,188 new faba bean transcripts were identified
Method / resource The integrated faba bean transcriptome sequence contains 103,267 transcripts
Method / resource The integrated faba bean transcriptome is derived from 54,753 uni-genes

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Millimetric radiation decrease number of chromosomal infringements in tomato.

Taxon: tomatoSolanum lycopersicume0
Organ / stage: rootletse0
Treatment: millimetric radiation (MMR)e0
Outcome: number of chromosomal infringementse0
Direction: decreasee0

Not reportedComparator

Verbatim

e0
“At the influence of millimetric radiation (MMR) with wavelength of 5.6 mm; density of stream of capacity of 6–10 mwt/sm2 and several minutes’ expositions on dry and presoaked seeds of tomato, castor-oil plant and dope we observed stimulation of sprouting energy and seeds germinating power, change of protein synthesis and enzymatic activity of sprouts and also decrease of the number of chromosomal infringements in cel…” Show full quote
✓ located verbatim in the source · abstract, characters 0–435

Title

The influence of millimetric radiation on plant viability: 2. The changes in seeds’ metabolism after the treatment of soaked seeds

S. N. Maslobrod; L. B. Korletyanu; A. I. Ganya Surface Engineering and Applied Electrochemistry 2010. doi:10.3103/s1068375510060128

Other claims from this paper (9)

Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in tomato.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in tomato.
Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in castor-oil plant.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in castor-oil plant.
Intervention effect Millimetric radiation decrease number of chromosomal infringements in castor-oil plant.
Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in dope.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in dope.
Intervention effect Millimetric radiation decrease number of chromosomal infringements in dope.
Mechanism Water was proposed as the primary receptor of millimetric radiation in seeds.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Millimetric radiation decrease number of chromosomal infringements in dope.

Taxon: dopee0
Organ / stage: rootletse0
Treatment: millimetric radiation (MMR)e0
Outcome: number of chromosomal infringementse0
Direction: decreasee0

Not reportedComparator

Verbatim

e0
“At the influence of millimetric radiation (MMR) with wavelength of 5.6 mm; density of stream of capacity of 6–10 mwt/sm2 and several minutes’ expositions on dry and presoaked seeds of tomato, castor-oil plant and dope we observed stimulation of sprouting energy and seeds germinating power, change of protein synthesis and enzymatic activity of sprouts and also decrease of the number of chromosomal infringements in cel…” Show full quote
✓ located verbatim in the source · abstract, characters 0–435

Title

The influence of millimetric radiation on plant viability: 2. The changes in seeds’ metabolism after the treatment of soaked seeds

S. N. Maslobrod; L. B. Korletyanu; A. I. Ganya Surface Engineering and Applied Electrochemistry 2010. doi:10.3103/s1068375510060128

Other claims from this paper (9)

Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in tomato.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in tomato.
Intervention effect Millimetric radiation decrease number of chromosomal infringements in tomato.
Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in castor-oil plant.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in castor-oil plant.
Intervention effect Millimetric radiation decrease number of chromosomal infringements in castor-oil plant.
Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in dope.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in dope.
Mechanism Water was proposed as the primary receptor of millimetric radiation in seeds.

“decrease in density”

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