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Observationobservedoriginal resultmeasured

Claim · model-written summary

Expression changes were more dramatic and widespread in resynthesized hybrids than natural S. squalidus.

Taxon
S. squalidusSenecio squaliduse0
Outcome
expression changese0
Direction
more dramatic and widespreade0
Comparator
natural S. squaliduse0

Verbatim

e0

“These expression changes were more dramatic and widespread in resynthesized hybrids than in natural S. squalidus”

✓ located verbatim in the source · abstract, characters 1039–1151

Title

Extreme changes to gene expression associated with homoploid hybrid speciation

MATTHEW J. HEGARTY; GARY L. BARKER; ADRIAN C. BRENNAN; et al. Molecular Ecology 2009. doi:10.1111/j.1365-294x.2008.04054.x

Other claims from this paper (3)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Chromatin transitions coincided with gene expression changes.

Taxon
Gossypium darwiniiGossypium darwiniie1
Gene
gene expressione0
Outcome
changes in gene expressione0
Qualifier
These transitionse0

Not reportedDirection

Verbatim

e0

“These transitions occurred simultaneously with changes in gene expression”

✓ located verbatim in the source · abstract, characters 1377–1450
e1

“wild allotetraploid cotton Gossypium darwinii”

✓ located verbatim in the source · abstract, characters 287–332

Title

Histone Maps in Gossypium darwinii Reveal Epigenetic Regulation Drives Subgenome Divergence and Cotton Domestication

Jinlei Han; Guangrun Yu; Xin Zhang; et al. International Journal of Molecular Sciences 2023. doi:10.3390/ijms241310607

Other claims from this paper (10)
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Shock-induced total expression and homeolog partitioning changes appeared evolutionarily persistent.

Taxon
tetraploid wheatt0
Outcome
shock-induced expression changese0
Direction
evolutionarily persistente0

Verbatim

e0

“shock-induced expression changes at both the total expression level and subgenome homeolog partitioning are evolutionarily persistent”

✓ located verbatim in the source · abstract, characters 1120–1253
t0

“tetraploid wheat”

✓ located verbatim in the source · title, characters 81–97

Title

Transcriptome shock invokes disruption of parental expression-conserved genes in tetraploid wheat

Huakun Zhang; Xiaowan Gou; Ai Zhang; et al. Scientific Reports 2016. doi:10.1038/srep26363

Other claims from this paper (6)
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

Plastic methylation changes were not associated with differential gene expression.

Taxon
Arabidopsis lyrataArabidopsis lyratat0
Outcome
differential gene expressione0
Qualifier
plastic methylation changese0

Not reportedMaterialGeneCompoundOrgan / stageInteractorTreatmentComparatorSettingDirection

Verbatim

e0

“plastic methylation changes are not associated with differential gene expression.”

✓ located verbatim in the source · abstract, characters 1040–1121
t0

“Arabidopsis lyrata”

✓ located verbatim in the source · title, characters 116–134

Title

Environmental response in gene expression and DNA methylation reveals factors influencing the adaptive potential of Arabidopsis lyrata

Tuomas Hämälä; Weixuan Ning; Helmi Kuittinen; et al. eLife 2022. doi:10.7554/elife.83115

Other claims from this paper (9)
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors interpret evolution and domestication as driving later homeolog expression changes.

Outcome
homeolog-expression changese0
Qualifier
evolution and domestication under allotetraploidye0

Not reportedTaxon

Verbatim

e0

“evolution and domestication under allotetraploidy drive further homeolog-expression changes toward re-established subgenome expression asymmetry”

✓ located verbatim in the source · abstract, characters 1440–1584

Title

Transcriptome asymmetry in synthetic and natural allotetraploid wheats, revealed by RNA‐sequencing

Xutong Wang; Huakun Zhang; Yaling Li; et al. New Phytologist 2015. doi:10.1111/nph.13678

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Expression changes to BBAA subgenomes arose rapidly after allohexaploidization.

Taxon
bread wheatTriticum aestivumt0
Gene
BBAA subgenomese0
Outcome
expression changese0
Direction
rapid occurrencee0

Verbatim

e0

“the rapid occurrence of expression changes to the BBAA subgenomes subsequent to allohexaploidization”

✓ located verbatim in the source · abstract, characters 1343–1443
t0

“Bread Wheat”

✓ located verbatim in the source · title, characters 35–46

Title

Evolution of the BBAA Component of Bread Wheat during Its History at the Allohexaploid Level

Huakun Zhang; Bo Zhu; Bao Qi; et al. The Plant Cell 2014. doi:10.1105/tpc.114.128439

Other claims from this paper (8)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Genome doubling was associated with pronounced changes in O. taibaiensis gene expression patterns.

Taxon
Orychophragmus taibaiensisOrychophragmus taibaiensist0
Treatment
genome doublinge0
Outcome
changes in gene expression patternse0

Not reportedDirection

Verbatim

e0

“genome doubling was associated with pronounced changes in gene expression patterns”

✓ located verbatim in the source · abstract, characters 1241–1323
t0

“Orychophragmus taibaiensis”

✓ located verbatim in the source · title, characters 92–118

Title

Evolutionary history and genomic consequences of polyploidization in natural populations of Orychophragmus taibaiensis

Ingvarsson, Pär Epsilon Open Archive (Sveriges lantbruksuniversitet biblioteket (Swedish University of Agricultural Sciences)) 2026

Other claims from this paper (8)
Associationobservedoriginal resultmeasured

Claim · model-written summary

FT homologue expression changes were associated with loss of photoperiod plasticity.

Taxon
sunflowerHelianthus annuust0
Gene
FT homologuee0
Outcome
losse0
Direction
losse0

Verbatim

e0

“Paralogue-specific changes in FT homologue expression and tissue-specific changes in SOC1 homologue expression were associated with loss and reversal of plasticity, respectively”

✓ located verbatim in the source · abstract, characters 448–625
t0

“sunflower”

✓ located verbatim in the source · title, characters 35–44

Title

Connecting the sun to flowering in sunflower adaptation

BENJAMIN K. BLACKMAN; SCOTT D. MICHAELS; LOREN H. RIESEBERG Molecular Ecology 2011. doi:10.1111/j.1365-294x.2011.05166.x

Other claims from this paper (5)
Observationauthor interpretationreview summarybasis n/a

Claim · model-written summary

Cotton polyploid genomic and expression changes include both evolutionary-timescale and immediate changes after genome merger.

Outcome
genomic and expression alterationse0
Qualifier
on an evolutionary timescalee0

Verbatim

e0

“Many of the genomic and expression alterations have occurred on an evolutionary timescale, whereas others reflect more immediate consequences of genomic merger.”

✓ located verbatim in the source · abstract, characters 554–714
t0

“cotton”

✓ located verbatim in the source · title, characters 49–55

Title

Exploring the genomic mysteries of polyploidy in cotton

KEITH L. ADAMS; JONATHAN F. WENDEL Biological Journal of the Linnean Society 2004. doi:10.1111/j.1095-8312.2004.00342.x

Other claims from this paper (3)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genome merger had a greater effect on posthybridization expression than ploidy changes across studied kingdoms.

Taxon
plantsViridiplantaee1
Outcome
posthybridization expression patternse0
Direction
greateste0
Comparator
changes in ploidye0

Verbatim

e0

“Genome merger, not changes in ploidy, has the greatest effect on posthybridization expression patterns across all study systems.”

✓ located verbatim in the source · abstract, characters 1007–1135
e1

“animals, plants and fungi”

✓ located verbatim in the source · abstract, characters 821–846

Title

Cross‐kingdom transcriptomic trends in the evolution of hybrid gene expression

Anna H. Behling; David J. Winter; Austen R. D. Ganley; et al. Journal of Evolutionary Biology 2022. doi:10.1111/jeb.14059

Other claims from this paper (2)

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