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GiA Roots: software for the high throughput analysis of plant root system architecture 1

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Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

GiA Roots is extensible: an end-user can add functionality to estimate novel RSA traits.

Outcome
GiA Roots is extensiblee0

Not reportedComparator

Verbatim

e0

“GiA Roots is extensible and an end-user can add functionality so that GiA Roots can estimate novel RSA traits”

✓ located verbatim in the source · abstract, characters 1407–1516

Title

GiA Roots: software for the high throughput analysis of plant root system architecture

Taras Galkovskyi; Yuriy Mileyko; Alexander Bucksch; et al. BMC Plant Biology 2012. doi:10.1186/1471-2229-12-116

Other claims from this paper (4)

investigation of arbuscular mycorrhizal status and functionality by electrical impedance and capacitance measurement 1

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Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

EI and EC were applicable for in situ study of mycorrhizal function.

Taxon
cucumber and beane1
Outcome
well applicable for in situ investigatione0

Not reportedComparator

Verbatim

e0

“Measuring EI and EC proved to be well applicable for in situ investigation of functional aspects of mycorrhizae.”

✓ located verbatim in the source · abstract, characters 1137–1249
e1

“In the second one, root colonization, biomass production, EI and EC of Rhizophagus intraradices or Funneliformis mosseae, inoculated and non-inoculated cucumber and bean hosts were monitored.”

✓ located verbatim in the source · abstract, characters 453–644

Title

investigation of arbuscular mycorrhizal status and functionality by electrical impedance and capacitance measurement

Tünde Takács; Anna Füzy; Kálmán Rajkai; et al. Acta Biologica Szegediensis 2014

Other claims from this paper (6)

Assessing variation in physicochemical, structural, and functional properties of root starches from novel Tanzanian cassava (Manihot esculentaCrantz.) landraces 1

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Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Partial least squares discriminant analysis distinguished cassavas by starch functionality.

Taxon
cassavasManihot esculentae0
Outcome
divergence among the cassavase0
Comparator
starch functionalitye0

Verbatim

e0

“partial least square discriminant analysis, which highlighted the divergence among the cassavas based on starch functionality.”

✓ located verbatim in the source · abstract, characters 1113–1239

Title

Assessing variation in physicochemical, structural, and functional properties of root starches from novel Tanzanian cassava (Manihot esculentaCrantz.) landraces

Mariam K. Mtunguja; Maysaya Thitisaksakul; Yasinta C. Muzanila; et al. Starch - Stärke 2015. doi:10.1002/star.201500179

Other claims from this paper (10)

Cloning and functional analysis of chicory root fructan1‐exohydrolase I (1‐FEH I): a vacuolar enzyme derivedfrom a cell‐wall invertase ancestor? Mass fingerprint of the 1‐FEH I enzyme 1

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Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Chicory 1-FEH I cDNA was cloned and shown functional by expression in potato tubers.

Gene
1‐FEH Ie0
Outcome
Functionality of the cDNAe1

Not reportedComparatorValue

Verbatim

e0

“This paper describes the cloning and functional analysis of chicory ( Cichorium intybus L.) fructan 1‐exohydrolase I cDNA ( 1‐FEH I ).”

✓ located verbatim in the source · abstract, characters 8–142
e1

“Functionality of the cDNA was demonstrated by heterologous expression in potato tubers.”

✓ located verbatim in the source · abstract, characters 544–631

Title

Cloning and functional analysis of chicory root fructan1‐exohydrolase I (1‐FEH I): a vacuolar enzyme derivedfrom a cell‐wall invertase ancestor? Mass fingerprint of the 1‐FEH I enzyme

Wim Van den Ende; An Michiels; Joke De Roover; et al. The Plant Journal 2000. doi:10.1111/j.1365-313x.2000.00890.x

Other claims from this paper (7)

Multivariate analyses of root phenotype and dynamic transcriptome underscore valuable root traits and water‐deficit responsive gene networks in maize 1

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Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Genome-wide WGCNA identified system-level functionality of genes associated with specific root traits.

Taxon
maizeZea mayst0
Outcome
system‐level functionality of genes associated with specific root traitse0

Not reportedComparatorValue

Verbatim

t0

“maize”

✓ located verbatim in the source · title, characters 144–149
e0

“Genome‐wide WGCNA identified system‐level functionality of genes associated with specific root traits”

✓ located verbatim in the source · abstract, characters 1374–1475

Title

Multivariate analyses of root phenotype and dynamic transcriptome underscore valuable root traits and water‐deficit responsive gene networks in maize

Xia Zhang; Junling Pang; Xuhui Ma; et al. Plant Direct 2019. doi:10.1002/pld3.130

Other claims from this paper (8)

A trait‐based approach to plant species selection to increase functionality of farmland vegetative strips 1

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Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The method identified nine traits relevant to water quality, pollinators or pest natural enemies.

Taxon
plant speciest0
Outcome
Key plant traits identifiede0
Value
floral display size, flower color, nectar contente0

Verbatim

e0

“Key plant traits identified, included floral display size, flower color, nectar content, leaf surface area, leaf trichome density, percentage fine roots, root length, rooting depth, and root density”

✓ located verbatim in the source · abstract, characters 1300–1498
t0

“plant species selection”

✓ located verbatim in the source · title, characters 26–49

Title

A trait‐based approach to plant species selection to increase functionality of farmland vegetative strips

Claire J. Cresswell; Heidi M. Cunningham; Andy Wilcox; et al. Ecology and Evolution 2019. doi:10.1002/ece3.5047

Other claims from this paper (2)

RocTest: A standardized method to assess the performance of root organ cultures in the propagation of arbuscular mycorrhizal fungi 1

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Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

RocTest was shown to work by evaluating the performance of three ROC species in propagating three AMF species.

Taxon
ROCse0
Interactor
AMFe0symbiont
Outcome
performancee0
Comparator
three species of ROCse0

Verbatim

e0

“We demonstrate functionality of RocTest by evaluating the performance of three species of ROCs ( Daucus carota , Medicago truncatula , Nicotiana benthamiana) in the propagation of three species of AMF”

✓ located verbatim in the source · abstract, characters 747–947

Title

RocTest: A standardized method to assess the performance of root organ cultures in the propagation of arbuscular mycorrhizal fungi

Dane Goh; Julien G. A. Martin; Claudia Banchini; et al. Frontiers in Microbiology 2022. doi:10.3389/fmicb.2022.937912

Other claims from this paper (1)

Temperature changes in the root ecosystem affect plant functionality 1

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Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

The authors engineered TGRooZ, a device that generates a temperature gradient for in vitro or greenhouse growth assays, unlike homogeneous high temperatures applied to shoot and root.

Outcome
a device that generates a temperature gradient for in vitro or greenhouse growth assayse1
Comparator
homogeneous high temperaturese2

Verbatim

e1

“we engineered the TGRooZ, a device that generates a temperature gradient for in vitro or greenhouse growth assays”

✓ located verbatim in the source · abstract, characters 678–791
e2

“apply homogeneous high temperatures to both shoot and root”

✓ located verbatim in the source · abstract, characters 211–269

Title

Temperature changes in the root ecosystem affect plant functionality

Mary Paz González-García; Carlos M. Conesa; Alberto Lozano-Enguita; et al. Plant Communications 2022. doi:10.1016/j.xplc.2022.100514

Other claims from this paper (3)

An image‐based technique for automated root disease severity assessment using PlantCV 1

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Method / resourceauthor interpretationoriginal resultmeasured

Claim · model-written summary

RootDS provides greater functionality in disease score data sets and alternative image sets for RSML.

Taxon
common beanPhaseolus vulgarise1
Interactor
Fusarium root rote1pathogen
Outcome
greater functionality in disease score data setse0
Direction
greatere0

Not reportedComparatorValue

Verbatim

e0

“the RootDS pipeline provides greater functionality in disease score data sets and provides an alternative method for generating image sets for use in available RSML software.”

✓ located verbatim in the source · abstract, characters 1215–1389
e1

“We tested the pipeline in common bean inoculated with Fusarium root rot.”

✓ located verbatim in the source · abstract, characters 900–972

Title

An image‐based technique for automated root disease severity assessment using PlantCV

Logan D. Pierz; Dilyn R. Heslinga; C. Robin Buell; et al. Applications in Plant Sciences 2023. doi:10.1002/aps3.11507

Other claims from this paper (2)

Modeling the effects of strigolactone levels on maize root system architecture 1

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Method / resourceobservedoriginal resultbasis n/a

Claim · model-written summary

A Mathematica platform integrates metabolic and three-dimensional maize root growth models.

Taxon
maizeZea mayst0
Outcome
simulation platforme1
Qualifier
built using Mathematicae0

Not reportedComparator

Verbatim

e0

“Here, we present an example of such a platform that is built using Mathematica.”

✓ located verbatim in the source · abstract, characters 908–987
e1

“We then integrate the two models in a simulation platform, where we also add the functionality to analyze the effect of strigolactone levels on root phenotype.”

✓ located verbatim in the source · abstract, characters 1376–1535
t0

“maize”

✓ located verbatim in the source · title, characters 48–53

Title

Modeling the effects of strigolactone levels on maize root system architecture

Abel Lucido; Fabian Andrade; Oriol Basallo; et al. Frontiers in Plant Science 2024. doi:10.3389/fpls.2023.1329556

Other claims from this paper (4)

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