By interacting organism › Bacteria › Zoogloeaceae

Observationobservedoriginal resultmeasured

Claim · model-written summary

Site H was enriched with putative phosphorus-transforming taxa, Arthrobacter and Thauera.

Taxon: garlicAllium sativume0
Interactor: ArthrobacterArthrobactere2other
Second interactor: ThaueraThauerae2other
Outcome: putative phosphorus-transforming taxae2
Direction: enrichede2

Verbatim

e0
“growth differences in adjacent garlic fields under uniform management”
✓ located verbatim in the source · abstract, characters 215–284

e2
“H was enriched with putative phosphorus-transforming taxa (e.g., Arthrobacter and Thauera )”
✓ located verbatim in the source · abstract, characters 1056–1147

Title

Rhizosphere microbial community stability and phosphorus availability drive phenotypic differences in garlic growth

Rongxin Wang; Shidong He; Linguang Lv; et al. Annals of Microbiology 2026. doi:10.1186/s13213-025-01837-3

Other claims from this paper (13)

Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Azoarcus at maturation played a pivotal role in soil BNF

Taxon: riceOryza sativae0
Organ / stage: maturatione4
Interactor: AzoarcusAzoarcuse4symbiont
Outcome: soil BNFe4

Verbatim

e0
“two typical rice growth stages (tillering and maturation) in paddy fields”
✓ located verbatim in the source · abstract, characters 624–697

e4
“Stage‐specific key diazotrophs, such as Rhizobium at tillering and Azoarcus at maturation, played pivotal roles in the soil BNF”
✓ located verbatim in the source · abstract, characters 1338–1465

Title

Stage‐specific biological nitrogen fixation depends on distinct carbon and nitrogen availability in long‐term fertilized paddy fields

Xinyue Hu; Wei Gao; Xupeng Wang; et al. Functional Ecology 2026. doi:10.1111/1365-2435.70272

Other claims from this paper (9)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Azoarcus was associated with architectural maintenance.

Taxon: Populus euphraticaPopulus euphraticat0
Interactor: AzoarcusAzoarcuse0other
Outcome: architectural maintenancee0

Not reportedDirection

Verbatim

e0
“functional bacteria associated with architectural maintenance (e.g., Azoarcus ) showed distinct patterns”
✓ located verbatim in the source · abstract, characters 1696–1800

t0
“Populus euphratica”
✓ located verbatim in the source · title, characters 80–98

Title

Size-dependent succession of microbial communities in the decaying heartwood of Populus euphratica and its association with tree architecture in the lower Tarim River, Northwest China

Xuexiao Li; Shiyu Yao; Tayierjiang Aishan Plant Physiology and Biochemistry 2026. doi:10.1016/j.plaphy.2026.111403

Other claims from this paper (10)

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Keystone taxa were positively correlated with microbial biomass carbon and nitrate nitrogen.

Taxon: peanut/cottonGossypium hirsutum Arachis hypogaeat0
Interactor: AzoarcusAzoarcuse0symbiont
Outcome: microbial biomass carbon and nitrate nitrogene0
Direction: positivelye0

Verbatim

t0
“peanut/cotton”
✓ located verbatim in the source · title, characters 101–114

e0
“Keystone taxa, including opportunists such as Azoarcus, Azohydromonas , and Steroidobacter , and generalists like Pseudomonas and Azotobacter , correlated positively with microbial biomass carbon and nitrate nitrogen”
✓ located verbatim in the source · abstract, characters 1793–2009

Title

Opportunistic keystone diazotrophs from co-occurrence networks drive biological nitrogen fixation in peanut/cotton intercropping systems

Shijie Zhang; Yingchun Han; Guoping Wang; et al. Journal of Integrative Agriculture 2025. doi:10.1016/j.jia.2025.05.005

Other claims from this paper (14)

Association Rhizosphere soils had higher biological nitrogen fixation potentials than bulk soils.
Intervention effect Intercropping increased nitrogen fixation rate relative to monoculture.
Intervention effect Intercropping increased nitrogenase activity relative to monoculture.
Intervention effect Intercropping increased nifH gene abundance relative to monoculture.
Observation Diazotrophic community composition and diversity differed significantly.
Association Proteobacteria excluding Alphaproteobacteria were enriched in intercropping and rhizosphere soils.
Observation Cyanobacteria and Firmicutes were less abundant.
Observation Heterogeneous selection dominated rhizosphere community assembly at 91.9%.
Observation Heterogeneous selection dominated intercropping-soil community assembly at 86.3%.
Association Intercropping and rhizosphere soil networks were more complex and interconnected.
Observation Opportunistic diazotrophs dominated the networks at 78.8–85.9%.
Observation Specialists represented 10.2–18.5% of network communities.
Observation Generalists represented 1.38–3.80% of network communities.
Recommendation The authors recommend targeted intercropping to optimize biological nitrogen fixation and soil fertility.

Observationobservedoriginal resultmeasured

Claim · model-written summary

A. olearius DQS4 treated plants had 2,015 DEGs.

Taxon: Brachypodium distachyonBrachypodium distachyone1
Treatment: A. olearius DQS4e0
Interactor: A. olearius DQS4Azoarcus oleariuse0symbiont
Outcome: DEGse0
Value: 2,015 DEGse0

Verbatim

e0
“2,015 DEGs in A. olearius DQS4”
✓ located verbatim in the source · abstract, characters 1224–1254

e1
“Brachypodium distachyon”
✓ located verbatim in the source · abstract, characters 231–254

Title

Halotolerant bacterial endophyte Bacillus velezensis CBE mediates abiotic stress tolerance with minimal transcriptional modifications in Brachypodium distachyon

Islam A. Abd El-Daim; Gareth Raynes; Narcis Fernandez-Fuentes; et al. Frontiers in Plant Science 2025. doi:10.3389/fpls.2024.1485391

Other claims from this paper (3)

Intervention effect Bacillus velezensis CBE induced osmotic stress tolerance under nitrogen deprivation.
Observation B. velezensis CBE treated plants showed 73 differentially expressed transcripts under stress.
Observation A. brasilense Cd treated plants had 1,078 DEGs.

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Blue film promoted recruitment of Zoogloea.

Taxon: Fritillaria cirrhosaFritillaria cirrhosat0
Treatment: BFe0
Interactor: ZoogloeaZoogloeae0symbiont
Outcome: recruitment of plant growth-promoting bacterial generae0
Direction: promotede0

Not reportedComparator

Verbatim

e0
“recruitment of plant growth-promoting bacterial genera, such as Desulfomicrobium and Zoogloea , and nematophagous fungi, including Stachylidium , was promoted under BF”
✓ located verbatim in the source · abstract, characters 1132–1299

t0
“Fritillaria cirrhosa”
✓ located verbatim in the source · title, characters 72–92

Title

Light quality modulates yields and secondary metabolite accumulation in Fritillaria cirrhosa: Insights from rhizosphere metabolomics and microbiomics

Yi Lu; Dan Gao; Xusheng Gao; et al. Industrial Crops and Products 2025. doi:10.1016/j.indcrop.2025.120967

Other claims from this paper (12)

Intervention effect Blue film reduced the red-to-far-red light ratio relative to white film.
Intervention effect Blue film enhanced rhizosphere bacterial alpha diversity.
Intervention effect Blue film increased the negative edge ratio in the bacterial network.
Intervention effect Blue film increased relative bacterial network modularity by 55.6 %.
Intervention effect Blue film promoted recruitment of Desulfomicrobium.
Intervention effect Blue film promoted recruitment of Stachylidium.
Intervention effect Blue film increased rhizosphere metabolite diversity.
Intervention effect Blue film increased quercetin by 20.6 %.
Intervention effect Blue film increased berberine by 1211.6 %.
Association Emetine was positively correlated with Zoogloea.
Association Emetine was positively correlated with Desulfomicrobium.
Intervention effect Blue film increased F. cirrhosa yield.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Emetine was positively correlated with Zoogloea.

Taxon: Fritillaria cirrhosaFritillaria cirrhosat0
Interactor: ZoogloeaZoogloeae0symbiont
Outcome: emetinee0
Direction: positive correlatione0
Value: r > 0.5e0

Verbatim

e0
“a positive correlation ( r > 0.5) between emetine and plant growth-promoting microbes ( Zoogloea and Desulfomicrobium )”
✓ located verbatim in the source · abstract, characters 1749–1868

t0
“Fritillaria cirrhosa”
✓ located verbatim in the source · title, characters 72–92

Title

Light quality modulates yields and secondary metabolite accumulation in Fritillaria cirrhosa: Insights from rhizosphere metabolomics and microbiomics

Yi Lu; Dan Gao; Xusheng Gao; et al. Industrial Crops and Products 2025. doi:10.1016/j.indcrop.2025.120967

Other claims from this paper (12)

Intervention effect Blue film reduced the red-to-far-red light ratio relative to white film.
Intervention effect Blue film enhanced rhizosphere bacterial alpha diversity.
Intervention effect Blue film increased the negative edge ratio in the bacterial network.
Intervention effect Blue film increased relative bacterial network modularity by 55.6 %.
Intervention effect Blue film promoted recruitment of Desulfomicrobium.
Intervention effect Blue film promoted recruitment of Zoogloea.
Intervention effect Blue film promoted recruitment of Stachylidium.
Intervention effect Blue film increased rhizosphere metabolite diversity.
Intervention effect Blue film increased quercetin by 20.6 %.
Intervention effect Blue film increased berberine by 1211.6 %.
Association Emetine was positively correlated with Desulfomicrobium.
Intervention effect Blue film increased F. cirrhosa yield.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Potential beneficial bacteria regulated by melatonin were positively correlated with soil nutrient levels and plant growth of apple.

Taxon: apple plantsMalus domesticae0
Treatment: melatonine3
Interactor: Azoarcus, Pseudomonas and NocardioidesPseudomonasNocardioidesAzoarcuse3other
Outcome: soil nutrient levels and plant growthe3
Direction: positive correlatione3

Verbatim

e0
“The treatment significantly enhanced photosynthesis and the antioxidant capacity of apple plants”
✓ located verbatim in the source · abstract, characters 352–448

e3
“Random forest and linear regression analyses were used to screen for potential beneficial bacteria (e.g., Azoarcus, Pseudomonas and Nocardioides) specifically regulated by melatonin and revealed a positive correlation with soil nutrient levels and plant growth”
✓ located verbatim in the source · abstract, characters 725–985

Title

Melatonin promotes the recovery of apple plants after waterlogging by shaping the structure and function of the rhizosphere microbiome

Yang Cao; Peihua Du; Zhongyong Li; et al. Plant Cell & Environment 2024. doi:10.1111/pce.14903

Other claims from this paper (5)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Uliginosibacterium gangwonense MDD1 was isolated from rice root.

Taxon: riceOryza sativae0
Organ / stage: roote0
Interactor: Uliginosibacterium gangwonense MDD1Uliginosibacterium gangwonensee0symbiont
Outcome: Uliginosibacterium gangwonense MDD1e0

Verbatim

e0
“isolated a Rhodocyclaceae strain, Uliginosibacterium gangwonense MDD1, from rice root”
✓ located verbatim in the source · abstract, characters 1202–1287

Title

Two rice cultivars recruit different rhizospheric bacteria to promote aboveground regrowth after mechanical defoliation

Changjin Jiang; Fei Wang; Jinling Tian; et al. Microbiology Spectrum 2024. doi:10.1128/spectrum.01254-24

Other claims from this paper (8)

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

MDD1 inoculation increased defoliated Minghui63 aboveground regrowth by 61% versus germ-free conditions.

Taxon: riceOryza sativae1
Material: Minghui63e0
Treatment: MDD1 inoculatione0
Interactor: Uliginosibacterium gangwonense MDD1Uliginosibacterium gangwonensee2symbiont
Outcome: aboveground regrowthe0
Direction: promotede0
Value: 61%e0
Comparator: germ-free conditionse0

Verbatim

e0
“Compared with germ-free conditions, MDD1 inoculation promoted the aboveground regrowth of defoliated Minghui63 by 61%”
✓ located verbatim in the source · abstract, characters 1289–1406

e1
“two rice cultivars”
✓ located verbatim in the source · abstract, characters 344–362

e2
“Uliginosibacterium gangwonense MDD1”
✓ located verbatim in the source · abstract, characters 1236–1271

Title

Two rice cultivars recruit different rhizospheric bacteria to promote aboveground regrowth after mechanical defoliation

Changjin Jiang; Fei Wang; Jinling Tian; et al. Microbiology Spectrum 2024. doi:10.1128/spectrum.01254-24

Other claims from this paper (8)

Zoogloeaceae 88 claims

88 claims