Paper · 2026 · Functional Ecology

Stage‐specific biological nitrogen fixation depends on distinct carbon and nitrogen availability in long‐term fertilized paddy fields

Xinyue Hu; Wei Gao; Xupeng Wang; et al.

10
claims
20
verbatim quotes
1
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

Abstract Industrial Haber–Bosch provides 32 Tg nitrogen (N) per year to global croplands. Such large amounts of N fertilization will reshape soil N cycles. One uncertainty is whether and how these long‐term N inputs impact soil biological N 2 fixation (BNF) associated with plant growth, a crucial microbial‐driven process to decipher the balance between soil N and plant N in paddy fields. To fill this gap, we conducted a 10‐year field experiment to systematically evaluate the impacts of three N fertilization rates (0, 75 and 150 kg N ha −1 ) on soil BNF activity, diazotrophic communities and environmental dynamics at two typical rice growth stages (tillering and maturation) in paddy fields. Moderate N fertilization at a 75 kg N ha −1 rate significantly stimulated BNF activity and nif H gene abundance at the tillering stage, with increases of 20.9% and 49.7%, respectively. This enhancement was primarily due to the supply of available carbon (C) sources from organic acids, which promoted the BNF process to meet the N requirement from rice at the early stage. In contrast, BNF activity and nif H gene abundance decreased with increasing N levels at the maturation stages, reflecting the negative impact of N enrichment on diazotrophs. The accumulation of inorganic N and amino acids reduced the dependence on the BNF process. Stage‐specific key diazotrophs, such as Rhizobium at tillering and Azoarcus at maturation, played pivotal roles in the soil BNF. Soil‐dissolved organic C and inorganic N were positively correlated with BNF at the tillering stage, but negatively at the maturation stage. Random Forest analysis further revealed that the BNF was primarily regulated by available nutrients at the tillering stage, while closely associated with the key diazotrophs at the maturation stage. This study highlights that the stage‐specific BNF process depends on C availability and key diazotrophs with long‐term N fertilization, providing a basis for optimized N management in paddy fields. Read the free Plain Language Summary for this article on the Journal blog.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc-nd. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Moderate N fertilization at 75 kg N ha−1 significantly stimulated soil BNF activity at tillering by 20.9%

Organ / stage
tillering stagee1
Treatment
Moderate N fertilization at a 75 kg N ha −1 ratee1
Outcome
BNF activitye1
Direction
stimulatede1
Value
20.9%e1
Setting
paddy fieldse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e1

“Moderate N fertilization at a 75 kg N ha −1 rate significantly stimulated BNF activity and nif H gene abundance at the tillering stage, with increases of 20.9% and 49.7%, respectively”

✓ located verbatim in the source · abstract, characters 699–882 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Moderate N fertilization at 75 kg N ha−1 significantly increased nif H gene abundance at tillering by 49.7%

Organ / stage
tillering stagee1
Treatment
Moderate N fertilization at a 75 kg N ha −1 ratee1
Gene
nif He1
Outcome
nif H gene abundancee1
Direction
increasese1
Value
49.7%e1
Setting
paddy fieldse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e1

“Moderate N fertilization at a 75 kg N ha −1 rate significantly stimulated BNF activity and nif H gene abundance at the tillering stage, with increases of 20.9% and 49.7%, respectively”

✓ located verbatim in the source · abstract, characters 699–882 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

BNF activity and nif H gene abundance decreased with increasing N levels at the maturation stages

Organ / stage
maturation stagese2
Treatment
increasing N levelse2
Outcome
BNF activity and nif H gene abundancee2
Direction
decreasede2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e2

“BNF activity and nif H gene abundance decreased with increasing N levels at the maturation stages, reflecting the negative impact of N enrichment on diazotrophs”

✓ located verbatim in the source · abstract, characters 1085–1245 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Accumulation of inorganic N and amino acids reduced the dependence of rice on the BNF process

Compound
inorganic N and amino acidse3
Outcome
dependence on the BNF processe3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e3

“The accumulation of inorganic N and amino acids reduced the dependence on the BNF process”

✓ located verbatim in the source · abstract, characters 1247–1336 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Rhizobium at tillering played a pivotal role in soil BNF

Organ / stage
tilleringe4
Interactor
RhizobiumRhizobiume4symbiont
Outcome
soil BNFe4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Rhizobium
Rhizobium · Interactor · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e4

“Stage‐specific key diazotrophs, such as Rhizobium at tillering and Azoarcus at maturation, played pivotal roles in the soil BNF”

✓ located verbatim in the source · abstract, characters 1338–1465 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Azoarcus at maturation played a pivotal role in soil BNF

Organ / stage
maturatione4
Interactor
AzoarcusAzoarcuse4symbiont
Outcome
soil BNFe4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e4

“Stage‐specific key diazotrophs, such as Rhizobium at tillering and Azoarcus at maturation, played pivotal roles in the soil BNF”

✓ located verbatim in the source · abstract, characters 1338–1465 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Soil dissolved organic C and inorganic N were positively correlated with BNF at tillering

Organ / stage
tillering stagee5
Compound
dissolved organic C and inorganic Ne5
Outcome
BNFe5
Direction
positively correlatede5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e5

“Soil‐dissolved organic C and inorganic N were positively correlated with BNF at the tillering stage, but negatively at the maturation stage”

✓ located verbatim in the source · abstract, characters 1467–1606 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Soil dissolved organic C and inorganic N were negatively correlated with BNF at the maturation stage

Organ / stage
maturation stagee5
Compound
dissolved organic C and inorganic Ne5
Outcome
BNFe5
Direction
negativelye5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e5

“Soil‐dissolved organic C and inorganic N were positively correlated with BNF at the tillering stage, but negatively at the maturation stage”

✓ located verbatim in the source · abstract, characters 1467–1606 · show in text ↑
Associationobservedoriginal resultsimulated

Claim · model-written summary

Random Forest analysis indicated that BNF at tillering was primarily regulated by available nutrients

Organ / stage
tillering stagee6
Treatment
available nutrientse6
Outcome
BNFe6
Qualifier
Random Forest analysise6

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e6

“Random Forest analysis further revealed that the BNF was primarily regulated by available nutrients at the tillering stage, while closely associated with the key diazotrophs at the maturation stage”

✓ located verbatim in the source · abstract, characters 1608–1805 · show in text ↑
Associationobservedoriginal resultsimulated

Claim · model-written summary

BNF at maturation was closely associated with key diazotrophs

Organ / stage
maturation stagee6
Interactor
key diazotrophse6symbiont
Outcome
BNFe6

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“two typical rice growth stages (tillering and maturation) in paddy fields”

✓ located verbatim in the source · abstract, characters 624–697 · show in text ↑
e6

“Random Forest analysis further revealed that the BNF was primarily regulated by available nutrients at the tillering stage, while closely associated with the key diazotrophs at the maturation stage”

✓ located verbatim in the source · abstract, characters 1608–1805 · show in text ↑

fertilization · molecular: expression · Oryza sativa (rice)Positive and negative results

16 papers: 15 positive, 1 negative or no effect

14 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

12 papers more in this group

See all 16 papers →

nitrogen · molecular: expression · Oryza sativa (rice)Positive and negative results

45 papers: 29 positive, 16 negative or no effect

28 papers in the same direction as this paper · 16 in the opposite direction

  1. no effect
  2. negative
  3. negative

41 papers more in this group

See all 45 papers →

nitrogen · symbiosis · Oryza sativa (rice)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

fertilization · symbiosis · Oryza sativa (rice)Results agree

2 papers: 2 positive, 0 negative or no effect

1 paper in the same direction as this paper

  1. positive
See all 2 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.