By interacting organism › Bacteria › Azonexaceae

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Rhizoplane Dechloromonas was significantly related to cadmium.

Taxon: Zizania latifoliaZizania latifoliat0
Interactor: DechloromonasDechloromonase0other
Outcome: Cd(II)e0

Not reportedDirection

Verbatim

e0
“Streptomyces and Dechloromonas in rhizoplane, and Bradyrhizobium , Pseudolabrys , Mycobacterium , and Dechloromonas in rhizosphere were significantly related to Cd(II)”
✓ located verbatim in the source · abstract, characters 606–773

t0
“Mechanistic investigation of the associations between bacterial community composition and cadmium distribution in Zizania latifolia”
✓ located verbatim in the source · title, characters 0–131

Title

Mechanistic investigation of the associations between bacterial community composition and cadmium distribution in Zizania latifolia

Chen-Xi Fu; Jing-Jing Cai; Jun-Li Liu; et al. Ecotoxicology and Environmental Safety 2026. doi:10.1016/j.ecoenv.2026.119972

Other claims from this paper (16)

Observation Zizania leaves accumulated 0.06–0.77 mg/kg Cd(II).
Observation Zizania roots accumulated 0.73–1.57 mg/kg Cd(II).
Observation Zizania rhizosphere contained 0.43–3.15 mg/kg Cd(II).
Observation Genotype 3 had the highest leaf to soil cadmium enrichment coefficient, 0.6.
Association Phyllosphere Enterococcus was significantly related to cadmium.
Association Rhizoplane Streptomyces was significantly related to cadmium.
Association Rhizosphere Bradyrhizobium was significantly related to cadmium.
Association Rhizosphere Pseudolabrys was significantly related to cadmium.
Association Rhizosphere Mycobacterium was significantly related to cadmium.
Association Rhizosphere Dechloromonas was significantly related to cadmium.
Mechanism Enterococcus adsorbed cadmium through extracellular polysaccharides and precipitated cadmium sulfide.
Mechanism Rhizoplane and rhizosphere bacteria absorbed cadmium through surface groups and fixed it through polyphosphate synthesis and iron oxidation.
Observation Rhizoplane and rhizosphere shared 64.4%-80% of bacteria.
Observation Rhizoplane and phyllosphere shared 5.5%-6.9% of bacteria.
Observation Rhizosphere and phyllosphere shared 4.4%-6.1% of bacteria.
Association Cadmium disturbed bacterial secretion and amino acid metabolic pathways.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Rhizosphere Dechloromonas was significantly related to cadmium.

Taxon: Zizania latifoliaZizania latifoliat0
Interactor: DechloromonasDechloromonase0other
Outcome: Cd(II)e0

Not reportedDirection

Verbatim

e0
“Dechloromonas in rhizosphere were significantly related to Cd(II)”
✓ located verbatim in the source · abstract, characters 708–773

t0
“Mechanistic investigation of the associations between bacterial community composition and cadmium distribution in Zizania latifolia”
✓ located verbatim in the source · title, characters 0–131

Title

Mechanistic investigation of the associations between bacterial community composition and cadmium distribution in Zizania latifolia

Chen-Xi Fu; Jing-Jing Cai; Jun-Li Liu; et al. Ecotoxicology and Environmental Safety 2026. doi:10.1016/j.ecoenv.2026.119972

Other claims from this paper (16)

Observation Zizania leaves accumulated 0.06–0.77 mg/kg Cd(II).
Observation Zizania roots accumulated 0.73–1.57 mg/kg Cd(II).
Observation Zizania rhizosphere contained 0.43–3.15 mg/kg Cd(II).
Observation Genotype 3 had the highest leaf to soil cadmium enrichment coefficient, 0.6.
Association Phyllosphere Enterococcus was significantly related to cadmium.
Association Rhizoplane Streptomyces was significantly related to cadmium.
Association Rhizoplane Dechloromonas was significantly related to cadmium.
Association Rhizosphere Bradyrhizobium was significantly related to cadmium.
Association Rhizosphere Pseudolabrys was significantly related to cadmium.
Association Rhizosphere Mycobacterium was significantly related to cadmium.
Mechanism Enterococcus adsorbed cadmium through extracellular polysaccharides and precipitated cadmium sulfide.
Mechanism Rhizoplane and rhizosphere bacteria absorbed cadmium through surface groups and fixed it through polyphosphate synthesis and iron oxidation.
Observation Rhizoplane and rhizosphere shared 64.4%-80% of bacteria.
Observation Rhizoplane and phyllosphere shared 5.5%-6.9% of bacteria.
Observation Rhizosphere and phyllosphere shared 4.4%-6.1% of bacteria.
Association Cadmium disturbed bacterial secretion and amino acid metabolic pathways.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Dechloromonas, Salmonella, Klebsiella and Listeria were core microbial groups in wild and cultivated rice.

Taxon: wild and cultivated ricee0
Interactor: DechloromonasDechloromonase0symbiont
Outcome: core microbial groupse0

Verbatim

e0
“Dechloromonas , Salmonella , Klebsiella , and Listeria were the core microbial groups in wild and cultivated rice.”
✓ located verbatim in the source · abstract, characters 506–620

Title

Distinctive structure of endophytic microbial communities in two species of wild and cultivated rice

Lingyun Lei; Xingyi Li; Zixuan Xiong; et al. Microbiology Spectrum 2025. doi:10.1128/spectrum.02978-24

Other claims from this paper (5)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Dechloromonas was less prevalent in twisted trunks.

Taxon: Pinus yunnanensisPinus yunnanensise1
Organ / stage: twisted trunke0
Interactor: DechloromonasDechloromonase0symbiont
Outcome: Dechloromonase0
Direction: lesse0

Verbatim

e0
“there was less Dechloromonas in the twisted trunk.”
✓ located verbatim in the source · abstract, characters 644–694

e1
“Pinus yunnanensis Franch.”
✓ located verbatim in the source · abstract, characters 0–25

Title

Comparison of the Microbiome and Metabolome in the Phloem of Straight and Twisted Trunks of Pinus yunnanensis Franch

Jiayu Feng; Xiaolin Zhang; Hailin Li; et al. Forests 2025. doi:10.3390/f16040574

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Young alfalfa stands had potentially beneficial rhizosphere genera.

Taxon: alfalfaMedicago sativat0
Interactor: DechloromonasDechloromonase0symbiontt0
Outcome: potentially beneficial generae0
Qualifier: young stande0

Verbatim

e0
“potentially beneficial genera (e.g., Dechloromonas, Verrucomicrobium) in the young stand”
✓ located verbatim in the source · abstract, characters 794–882

t0
“Alfalfa Is Accompanied by Negative Succession of Rhizosphere Soil Microbial Communities”
✓ located verbatim in the source · title, characters 22–109

Title

Biological Decline of Alfalfa Is Accompanied by Negative Succession of Rhizosphere Soil Microbial Communities

Yuanyuan Ma; Yan Shen; Xiaoping Zhou; et al. Plants 2024. doi:10.3390/plants13182589

Other claims from this paper (11)

Observation Specific microbial taxa colonized alfalfa rhizosphere soils but not control soils.
Observation Old alfalfa stands had potentially harmful rhizosphere genera.
Mechanism Alfalfa roots selectively promoted or inhibited distinct soil taxa.
Association Time-enriched harmful fungi were negatively correlated with plant traits.
Association Time-depleted beneficial bacteria were positively correlated with plant traits.
Observation Vancomycin-biosynthesis bacterial genes trended lower in old stands.
Observation Zeatin-biosynthesis bacterial genes trended lower in old stands.
Observation Amino-acid-metabolism bacterial genes trended lower in old stands.
Association Fungal pathogens trended upward with stand age.
Association Wood saprotrophs trended upward with stand age.
Mechanism The authors inferred that root activity drove negative rhizosphere succession during alfalfa decline.

Associationobservedoriginal resultmeasured

Claim · model-written summary

In phosphorus-sufficient soil, E311 had more Dechloromonas than E109.

Taxon: soybeanGlycine maxt0
Material: E311e0
Interactor: DechloromonasDechloromonase0symbiont
Outcome: relative abundancese0
Direction: greatere0
Comparator: E109e0

Verbatim

e0
“genus Dechloromonas, Pseudomonas, Massilia, and Propionibacterium that showed greater relative abundances in E311 compared to E109”
✓ located verbatim in the source · abstract, characters 745–875

t0
“soybean”
✓ located verbatim in the source · title, characters 52–59

Title

Rhizosphere soil bacterial community composition in soybean genotypes and feedback to soil P availability

Tao ZHOU; Li WANG; Yong-li DU; et al. Journal of Integrative Agriculture 2019. doi:10.1016/s2095-3119(18)62115-x

Other claims from this paper (12)

Observationobservedoriginal resultmeasured

Claim · model-written summary

A wide variety of aerotolerant and anaerobic diazotrophic bacteria were retrieved from flooded rice roots.

Taxon: rice (Oryza sativa)Oryza sativat0
Organ / stage: flooded rice rootse6
Interactor: DechloromonasDechloromonase6symbiont
Second interactor: RhodopseudomonasRhodopseudomonase6symbiont
Outcome: aerotolerant and anaerobic diazotrophic bacteriae6
Qualifier: with diverse metabolic traitse6

Verbatim

t0
“rice (Oryza sativa)”
✓ located verbatim in the source · title, characters 75–94

e6
“A wide variety of aerotolerant and anaerobic diazotrophic bacteria (e.g. Dechloromonas, Rhodopseudomonas, Desulfovibrio, Geobacter, Chlorobium, Spirochaeta, Selenomonas and Dehalobacter) with diverse metabolic traits were retrieved from flooded rice roots”
✓ located verbatim in the source · abstract, characters 996–1251

Title

Strong shift in the diazotrophic endophytic bacterial community inhabiting rice (Oryza sativa) plants after flooding

Lucía Ferrando; Ana Fernández Scavino FEMS Microbiology Ecology 2015. doi:10.1093/femsec/fiv104

Other claims from this paper (6)

Intervention effect Flooding significantly increased nifH gene abundance in rice roots.
Intervention effect Flooding left nifH gene copy numbers in rice leaves unaffected, remaining low.
Intervention effect After flooding, root communities of replicate plots were more similar and diverse than before flooding.
Observation Flooding caused a remarkable shift in the endophytic diazotrophic community composition in rice.
Observation Gammaproteobacteria (66-98%) prevailed in rice roots before flooding.
Observation Betaproteobacteria was the dominant class (26-34%) in rice after flooding.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Nitrate stimulated Bacillus and Dechloromonas activity, with Dechloromonas temporarily reaching 25% of 16S rRNA.

Taxon: riceOryza sativat0
Treatment: Nitratee0
Interactor: DechloromonasDechloromonase0other
Outcome: Dechloromonase0
Direction: increasinge0
Value: 25%e0

Verbatim

e0
“Nitrate stimulated populations of Bacillus and Dechloromonas to become active, the latter temporarily increasing to 25% of total 16S rRNA”
✓ located verbatim in the source · abstract, characters 1301–1438

t0
“rice”
✓ located verbatim in the source · title, characters 18–22

Title

Identification of rice root associated nitrate, sulfate and ferric iron reducing bacteria during root decomposition

Daniel Scheid; Stephan Stubner; Ralf Conrad FEMS Microbiology Ecology 2004. doi:10.1016/j.femsec.2004.06.001

Other claims from this paper (11)

Observation Initially, Clostridium, Bacillus and Geobacter/Pelobacter dominated rice root bacterial abundance at about 65%.
Observation Clostridia decreased after five days in rice root incubation.
Observation CFB bacteria increased to 30% after five days in rice root incubation.
Intervention effect Nitrate addition promoted bacterial growth in rice root incubations.
Intervention effect Sulfate addition promoted bacterial growth in rice root incubations.
Observation Nitrate or sulfate affected H(2), acetate, propionate and butyrate concentrations in rice root incubations.
Observation Nitrate reducers apparently consumed H(2), acetate, propionate and butyrate in rice root incubations.
Observation Sulfate reducers produced acetate while utilizing propionate.
Intervention effect Nitrate suppressed CFB bacteria in rice root incubations.
Observation Sulfate stimulated Desulfosporosinus and Geobacter/Pelobacter, reaching about 15% of 16S rRNA.
Intervention effect Sulfate suppressed CFB activity in rice root incubations.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Facultative anaerobes Dechloromonas sp. MissR and Anaeromyxobacter dehalogenans 2CP-3 were specific bacteria of old nodal roots on July 2.

Taxon: riceOryza sativae0
Organ / stage: old nodal rootse2
Interactor: Dechloromonas sp. MissRDechloromonas sp. MissRe2symbiont
Second interactor: Anaeromyxobacter dehalogenans 2CP-3Anaeromyxobacter dehalogenanse2symbiont
Outcome: specific bacteriae1
Qualifier: facultative anaerobese2

Verbatim

e0
“nodal roots of rice plants”
✓ located verbatim in the source · title, characters 38–64

e1
“Some specific bacteria”
✓ located verbatim in the source · abstract, characters 1539–1561

e2
“facultative anaerobes Dechloromonas sp. MissR and Anaeromyxobacter dehalogenans 2CP-3 in old nodal roots on July 2”
✓ located verbatim in the source · abstract, characters 1827–1941

Title

Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses

Makoto Ikenaga; Susumu Asakawa; Yoshitetsu Muraoka; et al. Soil Science & Plant Nutrition 2003. doi:10.1080/00380768.2003.10410049

Other claims from this paper (16)

Azonexaceae 9 claims

9 claims