By interacting organism › Bacteria › Aurantimonadaceae

Observationobservedoriginal resultmeasured

Claim · model-written summary

Sequence clustering revealed four Aurantimonas OTUs.

Taxon: SoybeansGlycine maxt0
Interactor: AurantimonasAurantimonase0other
Outcome: operational taxonomic units (OTUs) for Aurantimonase0
Value: 4e0

Verbatim

e0
“revealed 4 and 8 operational taxonomic units (OTUs) for Aurantimonas and Methylobacterium, respectively”
✓ located verbatim in the source · abstract, characters 892–995

t0
“Soybeans”
✓ located verbatim in the source · title, characters 113–121

Title

Isolation and Genetic Characterization of Aurantimonas and Methylobacterium Strains from Stems of Hypernodulated Soybeans

Mizue Anda; Seishi Ikeda; Shima Eda; et al. Microbes and Environments 2011. doi:10.1264/jsme2.me10203

Other claims from this paper (5)

Observation Thirteen of 768 nutrient agar isolates were identified as Aurantimonas.
Observation Among 187 methanol agar isolates, 126 were identified as Methylobacterium.
Observation Sequence clustering revealed eight Methylobacterium OTUs.
Observation ERIC- and BOX-PCR indicated genomic uniformity of target isolates.
Observation Phylogenetic analysis found a phyllosphere-specific Aurantimonas cluster.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Phylogenetic analysis found a phyllosphere-specific Aurantimonas cluster.

Taxon: SoybeansGlycine maxt0
Interactor: AurantimonasAurantimonase0other
Outcome: phyllosphere-specific clustere0

Verbatim

e0
“phylogenetic analyses of Aurantimonas revealed a phyllosphere-specific cluster in the genus”
✓ located verbatim in the source · abstract, characters 1159–1250

t0
“Soybeans”
✓ located verbatim in the source · title, characters 113–121

Title

Isolation and Genetic Characterization of Aurantimonas and Methylobacterium Strains from Stems of Hypernodulated Soybeans

Mizue Anda; Seishi Ikeda; Shima Eda; et al. Microbes and Environments 2011. doi:10.1264/jsme2.me10203

Other claims from this paper (5)

Observation Thirteen of 768 nutrient agar isolates were identified as Aurantimonas.
Observation Among 187 methanol agar isolates, 126 were identified as Methylobacterium.
Observation Sequence clustering revealed four Aurantimonas OTUs.
Observation Sequence clustering revealed eight Methylobacterium OTUs.
Observation ERIC- and BOX-PCR indicated genomic uniformity of target isolates.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Aurantimonas sp. OTU responded especially to nodulation phenotype and nitrogen level.

Taxon: soybeansGlycine maxt0
Interactor: Aurantimonas sp.Aurantimonase0other
Outcome: Aurantimonas sp.e0

Verbatim

e0
“two operational taxonomic units (OTUs) (Aurantimonas sp. and Methylobacterium sp.) that were especially sensitive to nodulation phenotypes under SN fertilization and to nitrogen fertilization levels.”
✓ located verbatim in the source · abstract, characters 1054–1253

t0
“and hypernodulated (Nod(++)) soybeans”
✓ located verbatim in the source · abstract, characters 97–134

Title

Autoregulation of Nodulation Interferes with Impacts of Nitrogen Fertilization Levels on the Leaf-Associated Bacterial Community in Soybeans

Seishi Ikeda; Mizue Anda; Shoko Inaba; et al. Applied and Environmental Microbiology 2011. doi:10.1128/aem.02567-10

Other claims from this paper (8)

Observation Under standard nitrogen, Alphaproteobacteria were more abundant in nonnodulated and hypernodulated soybeans than wild type.
Intervention effect Wild-type soybean leaf bacterial structure was almost unaffected by nitrogen level.
Intervention effect Nitrogen levels altered leaf bacterial communities in nonnodulated and hypernodulated soybeans.
Intervention effect Heavy nitrogen decreased Alphaproteobacteria abundance in mutant soybeans.
Intervention effect Heavy nitrogen increased Gammaproteobacteria abundance in mutant soybeans.
Intervention effect Heavy nitrogen increased Firmicutes abundance in mutant soybeans.
Observation Methylobacterium sp. OTU responded especially to nodulation phenotype and nitrogen level.
Observation Arbuscular mycorrhizal infection was absent from examined roots.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Two Alphaproteobacteria OTUs (Aurantimonas sp. and Methylobacterium sp.) were drastically decreased under heavy nitrogen fertilization.

Taxon: soybeanGlycine maxt0
Treatment: HN fertilizatione7
Interactor: Aurantimonas sp.Aurantimonase7other
Second interactor: Methylobacterium sp.Methylobacteriume7other
Outcome: relative abundances of two OTUs in Alphaproteobacteriae7
Direction: drastically decreasede7

Verbatim

t0
“soybean stem-associated bacteria”
✓ located verbatim in the source · title, characters 20–52

e7
“The relative abundances of two OTUs in Alphaproteobacteria (Aurantimonas sp. and Methylobacterium sp.) were especially sensitive to nodulation phenotype and were drastically decreased under HN fertilization”
✓ located verbatim in the source · abstract, characters 1333–1539

Title

Community shifts of soybean stem-associated bacteria responding to different nodulation phenotypes and N levels

Seishi Ikeda; Takashi Okubo; Takakazu Kaneko; et al. The ISME Journal 2009. doi:10.1038/ismej.2009.119

Other claims from this paper (9)

Associationobservedoriginal resultmeasured

Claim · model-written summary

The two Alphaproteobacteria OTUs were especially sensitive to nodulation phenotype.

Taxon: soybeanGlycine maxt0
Interactor: Aurantimonas sp.Aurantimonase7other
Second interactor: Methylobacterium sp.Methylobacteriume7other
Outcome: relative abundances of two OTUs in Alphaproteobacteriae7
Qualifier: especially sensitive to nodulation phenotypee7

Not reportedDirection

Verbatim

t0
“soybean stem-associated bacteria”
✓ located verbatim in the source · title, characters 20–52

e7
“The relative abundances of two OTUs in Alphaproteobacteria (Aurantimonas sp. and Methylobacterium sp.) were especially sensitive to nodulation phenotype and were drastically decreased under HN fertilization”
✓ located verbatim in the source · abstract, characters 1333–1539

Title

Community shifts of soybean stem-associated bacteria responding to different nodulation phenotypes and N levels

Seishi Ikeda; Takashi Okubo; Takakazu Kaneko; et al. The ISME Journal 2009. doi:10.1038/ismej.2009.119

Other claims from this paper (9)

Aurantimonadaceae 15 claims

15 claims