By interacting organism › Bacteria › Sphaerotilaceae

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Aquabacterium was significantly negatively correlated with luteolin and acteoside.

Taxon: Lagotis brevitubaLagotis brevitubat0
Interactor: AquabacteriumAquabacteriume4symbiont
Outcome: Luteolin and Acteosidee4
Direction: negative correlationse4

Verbatim

t0
“Lagotis brevituba Maxim.”
✓ located verbatim in the source · title, characters 35–59

e4
“Aquabacterium exhibited significant negative correlations with Luteolin and Acteoside”
✓ located verbatim in the source · abstract, characters 2322–2407

Title

Analysis of microbial diversity in Lagotis brevituba Maxim. from different production areas on the Qinghai-Xizang Plateau and its correlation with secondary metabolic products

Huiyuan Ma; Jianan Li; Cairen BanMa; et al. Frontiers in Microbiology 2026. doi:10.3389/fmicb.2026.1797784

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Pelomonas, Sphingomonas and Brevibacillus became prevalent during stomatal targeting.

Taxon: orchide1
Organ / stage: stomatal targetinge0
Interactor: PelomonasRoseatelese0symbiont
Second interactor: SphingomonasSphingomonase0symbiont
Outcome: Pelomonas, Sphingomonas, Brevibacillus, and Rothia became prevalente0

Verbatim

e0
“Pelomonas, Sphingomonas, Brevibacillus, and Rothia became prevalent during stomatal targeting”
✓ located verbatim in the source · abstract, characters 1523–1616

e1
“an orchid”
✓ located verbatim in the source · abstract, characters 730–739

Title

Bacterial endophytes journey from the seed to the seedling: an analysis of community structural shifts and bacterial localization during colonization

Stacey Darling Novak; Katheryn Ashley Aguirre; Wesley Robert Neher; et al. BMC Plant Biology 2026. doi:10.1186/s12870-026-08113-9

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

DNA analysis underestimated several known root associates (Comamonadaceae, Rhizobacter, Variovorax), which had elevated protein synthesis potential in rhizosphere soil.

Taxon: Boechera strictaBoechera strictae0
Interactor: ComamonadaceaeComamonadaceaee1symbiont
Second interactor: RhizobacterRhizobactere1symbiont
Outcome: PSPe1
Direction: elevatede1
Qualifier: Variovoraxe1
Setting: rhizosphere soile1

Verbatim

e0
“rhizosphere and bulk soils of a Wyoming native plant Boechera stricta”
✓ located verbatim in the source · abstract, characters 399–468

e1
“underestimated the importance of several known root associates (Comamonadaceae, Rhizobacter, and Variovorax), which had elevated PSP in the rhizosphere soil”
✓ located verbatim in the source · abstract, characters 795–951

Title

A comparison of 16S rRNA-gene and 16S rRNA-transcript derived microbial communities in bulk and rhizosphere soils

Alessandra Ceretto; Cynthia Weinig Frontiers in Microbiology 2025. doi:10.3389/fmicb.2025.1608399

Other claims from this paper (5)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Roseateles chitinivorans is highly abundant in the rhizosphere and root microbiomes of maize and rice.

Taxon: maize and riceOryza sativa Zea mayse2
Interactor: R. chitinivoransRoseateles chitinivoranse2symbiont
Outcome: highly abundant in the rhizosphere and root microbiomese2

Verbatim

e2
“R. chitinivorans is also highly abundant in the rhizosphere and root microbiomes of maize and rice and enhanced the growth of these two plant species”
✓ located verbatim in the source · abstract, characters 660–809

Title

A Broadly Distributed Rhizobacterium, Roseateles chitinivorans P500, Promotes Growth and Systemic Resistance via Jasmonic Acid-Dependent Oxylipin Signaling in Grasses

Pei-Cheng Huang; Christopher Q. Ngo; Adoriam DeWalt; et al. Molecular Plant-Microbe Interactions 2025. doi:10.1094/mpmi-10-25-0142-fi

Other claims from this paper (10)

Intervention effect Inoculation of roots with RcP500 promoted growth of switchgrass.
Intervention effect Inoculation of roots with RcP500 induced systemic resistance to Bipolaris leaf spot in switchgrass.
Association Roseateles chitinivorans enhanced the growth of maize and rice.
Intervention effect RcP500 elicited systemic resistance against anthracnose leaf blight in maize.
Intervention effect RcP500 elicited systemic resistance against southern corn leaf blight in maize.
Mechanism JA-dependent processes were required for RcP500-elicited synthesis of the JA precursor 12-OPDA in maize.
Mechanism JA-dependent processes were required for RcP500-elicited synthesis of the oxylipin 9,10-KODA in maize.
Mechanism Xylem sap transfusion from RcP500-colonized plants corroborated the role of JA in promoting signaling intermediates in grasses.
Intervention effect Root JA synthesis was downregulated upon RcP500 colonization in grasses.
Intervention effect Gibberellic acid was induced upon RcP500 colonization in grasses.

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Roseateles chitinivorans enhanced the growth of maize and rice.

Taxon: maize and riceOryza sativa Zea mayse2
Interactor: R. chitinivoransRoseateles chitinivoranse2symbiont
Outcome: growthe2
Direction: enhancede2

Verbatim

e2
“R. chitinivorans is also highly abundant in the rhizosphere and root microbiomes of maize and rice and enhanced the growth of these two plant species”
✓ located verbatim in the source · abstract, characters 660–809

Title

A Broadly Distributed Rhizobacterium, Roseateles chitinivorans P500, Promotes Growth and Systemic Resistance via Jasmonic Acid-Dependent Oxylipin Signaling in Grasses

Pei-Cheng Huang; Christopher Q. Ngo; Adoriam DeWalt; et al. Molecular Plant-Microbe Interactions 2025. doi:10.1094/mpmi-10-25-0142-fi

Other claims from this paper (10)

Intervention effect Inoculation of roots with RcP500 promoted growth of switchgrass.
Intervention effect Inoculation of roots with RcP500 induced systemic resistance to Bipolaris leaf spot in switchgrass.
Observation Roseateles chitinivorans is highly abundant in the rhizosphere and root microbiomes of maize and rice.
Intervention effect RcP500 elicited systemic resistance against anthracnose leaf blight in maize.
Intervention effect RcP500 elicited systemic resistance against southern corn leaf blight in maize.
Mechanism JA-dependent processes were required for RcP500-elicited synthesis of the JA precursor 12-OPDA in maize.
Mechanism JA-dependent processes were required for RcP500-elicited synthesis of the oxylipin 9,10-KODA in maize.
Mechanism Xylem sap transfusion from RcP500-colonized plants corroborated the role of JA in promoting signaling intermediates in grasses.
Intervention effect Root JA synthesis was downregulated upon RcP500 colonization in grasses.
Intervention effect Gibberellic acid was induced upon RcP500 colonization in grasses.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Enriched Pelomonas correlated positively with benzyl alcohol and benzofuran levels.

Taxon: tomatoSolanum lycopersicumt0
Interactor: PelomonasRoseatelese0symbiont
Outcome: benzyl alcohol and benzofuran levelse0
Direction: positivelye0

Verbatim

e0
“enriched bacterial taxa such as Pelomonas and Comamonadaceae positively correlated with benzyl alcohol and benzofuran levels in the root volatilome.”
✓ located verbatim in the source · abstract, characters 1154–1302

t0
“tomato root”
✓ located verbatim in the source · title, characters 51–62

Title

Foliar infections by Botrytis cinerea modulate the tomato root volatilome and microbiome

Muhammad Syamsu Rizaludin; Ana Shein Lee Díaz; Hans Zweers; et al. FEMS Microbiology Ecology 2025. doi:10.1093/femsec/fiaf042

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Pelomonas was the only core root genus.

Taxon: soybeanGlycine maxt0
Interactor: PelomonasRoseatelese0other
Outcome: sole core root genuse0

Verbatim

e0
“Pelomonas was the sole core root genus”
✓ located verbatim in the source · abstract, characters 1294–1332

t0
“the soybean (Glycine max L.) rhizosphere”
✓ located verbatim in the source · abstract, characters 274–314

Title

Can silicate types regulate plant defense and rhizospheric microbiome diversity differently during heat stress conditions?

Waqar Ahmad; Ram Ray; Abdul Latif Khan The Science of The Total Environment 2025. doi:10.1016/j.scitotenv.2025.180812

Other claims from this paper (13)

Intervention effect Silicic acid raised biomass by 86% under heat stress.
Intervention effect Magnesium silicate raised biomass by 82% under heat stress.
Intervention effect Silicate treatments reduced phyllosphere H₂O₂ by 26%.
Intervention effect Silicate treatments reduced rhizosphere H₂O₂ by 33%.
Intervention effect Silicates enhanced rhizosphere β-glucosidase activity 2.6 fold.
Intervention effect Silicates raised rhizospheric Proteobacteria abundance from about 65% to about 74%.
Observation Silicate types downregulated heat shock transcription factors.
Observation Si treatments shifted rhizosphere bacterial composition significantly.
Observation Proteobacteria and Bacteroidetes dominated rhizosphere soil.
Observation The heat stress rhizosphere core microbiome had 14 genera.
Observation Pelomonas puraquae was core in both compartments.
Observation Silicate treatments shifted microbial metabolic pathways.
Observation Silicate treated roots were enriched for auxin biosynthesis under heat stress.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Pelomonas puraquae was core in both compartments.

Taxon: soybeanGlycine maxt0
Interactor: Pelomonas puraquaeRoseateles puraquaee0other
Outcome: core species in both compartmentse0

Verbatim

e0
“Pelomonas puraquae core species in both compartments”
✓ located verbatim in the source · abstract, characters 1338–1390

t0
“the soybean (Glycine max L.) rhizosphere”
✓ located verbatim in the source · abstract, characters 274–314

Title

Can silicate types regulate plant defense and rhizospheric microbiome diversity differently during heat stress conditions?

Waqar Ahmad; Ram Ray; Abdul Latif Khan The Science of The Total Environment 2025. doi:10.1016/j.scitotenv.2025.180812

Other claims from this paper (13)

Intervention effect Silicic acid raised biomass by 86% under heat stress.
Intervention effect Magnesium silicate raised biomass by 82% under heat stress.
Intervention effect Silicate treatments reduced phyllosphere H₂O₂ by 26%.
Intervention effect Silicate treatments reduced rhizosphere H₂O₂ by 33%.
Intervention effect Silicates enhanced rhizosphere β-glucosidase activity 2.6 fold.
Intervention effect Silicates raised rhizospheric Proteobacteria abundance from about 65% to about 74%.
Observation Silicate types downregulated heat shock transcription factors.
Observation Si treatments shifted rhizosphere bacterial composition significantly.
Observation Proteobacteria and Bacteroidetes dominated rhizosphere soil.
Observation The heat stress rhizosphere core microbiome had 14 genera.
Observation Pelomonas was the only core root genus.
Observation Silicate treatments shifted microbial metabolic pathways.
Observation Silicate treated roots were enriched for auxin biosynthesis under heat stress.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

S1P1 enriched Paucibacter and Massilia.

Taxon: PotatoSolanum tuberosumt0
Treatment: S1P1 treatmente0
Interactor: PaucibacterRoseatelese0symbiont
Second interactor: MassiliaMassiliae0symbiont
Outcome: Paucibacter and Massiliae0
Direction: enrichede0

Not reportedComparator

Verbatim

e0
“the S1P1 treatment enriched beneficial taxa such as Paucibacter and Massilia”
✓ located verbatim in the source · abstract, characters 1195–1271

t0
“Potato Growth”
✓ located verbatim in the source · title, characters 100–113

Title

Exogenous Plant Growth-Promoting Rhizobacteria Enhance the Promoting Effect of Polyaspartic Acid on Potato Growth by Improving Rhizosphere Nutrient Availability and Reshaping Microbial Community

Xin Zhou; Xia Zhu; Xiangquan Fan; et al. Plants 2025. doi:10.3390/plants14223530

Other claims from this paper (11)

Intervention effect Combined PASP and PGPR increased potato plant height by 9.59% over PASP alone.
Intervention effect Combined PASP and PGPR increased potato stem diameter by 28.39%.
Intervention effect Combined PASP and PGPR increased potato root length by 38.61%.
Intervention effect Combined PASP and PGPR increased potato root biomass by 21.26%.
Intervention effect Combined PASP and PGPR increased potato shoot biomass by 25.17%.
Intervention effect Co-application increased rhizosphere ammonium nitrogen by 40.00%.
Intervention effect Co-application increased rhizosphere nitrate nitrogen by 57.70%.
Intervention effect Co-application increased rhizosphere available potassium by 47.56%.
Intervention effect Co-application enhanced rhizosphere urease activity.
Intervention effect S1P1 suppressed Duganella and Pedobacter.
Association Available potassium and ammonium nitrogen shaped microbial community structure.

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Pelomonas was enriched in cold-tolerant variety 37 and correlated with GA content at 0.87.

Taxon: variety 37e0
Interactor: PelomonasRoseatelese0symbiont
Outcome: enriched abundancese0
Direction: enrichede0
Value: 0.87e0

Verbatim

e0
“cold-tolerant variety 37 had enriched abundances of dominant endophytes including Sphingomonas and Pelomonas, with correlation coefficients of 0.70 and 0.87 with GA content, respectively”
✓ located verbatim in the source · abstract, characters 1228–1414

Title

Integrated 16 S rRNA and transcriptome analysis reveal molecular and microbial mechanisms of cold-tolerant germination in hulless barley

Panrong Ren; Jie Wang; Lei Gong BMC Genomics 2025. doi:10.1186/s12864-025-12124-5

Other claims from this paper (8)

Intervention effect Cold reduced germination in variety 44 by 69%.
Intervention effect Cold reduced germination in variety 37 by 2%.
Observation Transcriptome analysis found 2,647 DEGs in variety 37.
Observation Transcriptome analysis found 2,392 DEGs in variety 44.
Association A green gene module correlated positively with GA content and included 10 core genes.
Association Sphingomonas was enriched in cold-tolerant variety 37 and correlated with GA content at 0.70.
Intervention effect Exogenous GA increased cold-stressed germination in variety 44 by 176.67%.
Mechanism Authors attribute cold-tolerant germination to endophyte, GA and gene synergy.

Sphaerotilaceae 41 claims

41 claims