By interacting organism › Bacteria › Sphaerotilaceae

Observationobservedoriginal resultmeasured

Claim · model-written summary

The core phyllosphere microbiome of the floating macrophyte contained genera such as Acidovorax, Asticcacaulis, Methylibium and Methylophilus.

Taxon: Floating Macrophytest0
Organ / stage: phyllospheree1
Interactor: Acidovorax, Asticcacaulis, Methylibium, and MethylophilusMethylophilusAcidovoraxAsticcacaulisMethylibiume1other
Outcome: core microbiomee1

Verbatim

t0
“Floating Macrophytes”
✓ located verbatim in the source · title, characters 36–56

e1
“The core microbiome in the phyllosphere contained genera such as Acidovorax, Asticcacaulis, Methylibium, and Methylophilus”
✓ located verbatim in the source · abstract, characters 603–725

Title

Phyllosphere Bacterial Community of Floating Macrophytes in Paddy Soil Environments as Revealed by Illumina High-Throughput Sequencing

Wan-Ying Xie; Jian-Qiang Su; Yong-Guan Zhu Applied and Environmental Microbiology 2014. doi:10.1128/aem.03191-14

Other claims from this paper (7)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Methylibium was the most heavily labeled bacterium in the switchgrass rhizosphere.

Taxon: switchgrassPanicum virgatume1
Interactor: MethylibiumMethylibiume0other
Outcome: most heavily labelled bacteriae0
Direction: most heavily labellede0

Verbatim

e0
“Methylibium from the order Burkholderiales were the most heavily labelled bacteria.”
✓ located verbatim in the source · abstract, characters 476–559

e1
“rhizosphere of switchgrass”
✓ located verbatim in the source · abstract, characters 1033–1059

Title

Enrichment of specific bacterial and eukaryotic microbes in the rhizosphere of switchgrass ( P anicum virgatum L .) through root exudates

Yuejian Mao; Xiangzhen Li; Eoghan M. Smyth; et al. Environmental Microbiology Reports 2014. doi:10.1111/1758-2229.12152

Other claims from this paper (6)

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Mitsuaria reduced bacterial leaf spot by 39% relative to the negative control in tomato greenhouse bioassays.

Taxon: tomatoSolanum lycopersicume0
Treatment: Mitsuaria sp.e0
Interactor: Mitsuaria sp.Roseatelese0biocontrol_agent
Outcome: bacterial leaf spote0
Direction: reductione0
Value: 39%e0
Comparator: negative controle0
Setting: greenhousee0

Verbatim

e0
“At a concentration of 10 7 cells/ml, Mitsuaria sp.provided the greatest biocontrol of bacterial leaf spot (P< 0.05) with a 39% reduction as compared to the negative control in tomato greenhouse bioassays”
✓ located verbatim in the source · abstract, characters 888–1091

Title

Effects of Microbial Inoculants on Biocontrol and Plant Growth Promotion

Maria Veronica Cepeda OhioLink ETD Center (Ohio Library and Information Network) 2012

Other claims from this paper (3)

Intervention effect Mitsuaria enhanced tomato shoot growth and biomass relative to negative controls.
Intervention effect Burkholderia enhanced tomato shoot growth and biomass relative to negative controls.
Observation Unformulated inoculants had utility comparable to commercial formulations.

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Mitsuaria enhanced tomato shoot growth and biomass relative to negative controls.

Taxon: tomatoSolanum lycopersicume0
Treatment: Mitsuaria sp.e0
Interactor: Mitsuaria sp.Roseatelese0symbiont
Outcome: shoot growth and biomasse0
Direction: enhancementse0
Value: up to 64%e0
Comparator: negative controlse0
Setting: greenhousee0

Verbatim

e0
“Mitsuaria sp. and Burkholderia sp.treatments provided the greatest enhancements of shoot growth and biomass (P < 0.05) up to 64% as compared to the negative controls in tomato greenhouse bioassays”
✓ located verbatim in the source · abstract, characters 1238–1434

Title

Effects of Microbial Inoculants on Biocontrol and Plant Growth Promotion

Maria Veronica Cepeda OhioLink ETD Center (Ohio Library and Information Network) 2012

Other claims from this paper (3)

Intervention effect Mitsuaria reduced bacterial leaf spot by 39% relative to the negative control in tomato greenhouse bioassays.
Intervention effect Burkholderia enhanced tomato shoot growth and biomass relative to negative controls.
Observation Unformulated inoculants had utility comparable to commercial formulations.

Observationobservedoriginal resultmeasured

Claim · model-written summary

nifH gene sequences from rhizosheath bacteria were most similar to those of Alcaligenes latus and Mesorhizobium loti.

Taxon: grassese0
Interactor: Mesorhizobium lotiMesorhizobium lotie4symbiont
Second interactor: Alcaligenes latusAzohydromonas latae4other
Gene: nifHe4
Outcome: nifH gene sequencese4
Qualifier: most similar to those from Alcaligenes latus and Mesorhizobium lotie4

Verbatim

e0
“Using scanning electron microscopy (SEM), we observed bacteria associated with rhizosheaths of the grasses Achnatherum hymenoides, Calamovilfa longifolia, Hesperostipa comata, and Pascopyrum smithii”
✓ located verbatim in the source · abstract, characters 136–334

e4
“Bacterial nifH gene sequences amplified from bacteria associated with rhizosheaths were most similar to those from Alcaligenes latus and Mesorhizobium loti”
✓ located verbatim in the source · abstract, characters 806–961

Title

Grass Rhizosheaths: Associated Bacterial Communities and Potential for Nitrogen Fixation

David Bergmann; Mike Zehfus; Linda Zierer; et al. Western North American Naturalist 2009. doi:10.3398/064.069.0102

Other claims from this paper (4)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Expressed clones were homologous to Pelomonas nifH sequences.

Taxon: Sweet PotatoesIpomoea batatast0
Interactor: PelomonasRoseatelese0symbiont
Gene: nifHe0
Outcome: homologous to the nifH sequencese0

Not reportedDirection

Verbatim

t0
“Sweet Potatoes”
✓ located verbatim in the source · title, characters 68–82

e0
“these clones were homologous to the nifH sequences of Bradyrhizobium, Pelomonas, and Bacillus sp. in the DNA database”
✓ located verbatim in the source · abstract, characters 380–497

Title

Expressed nifH Genes of Endophytic Bacteria Detected in Field-Grown Sweet Potatoes (Ipomoea batatas L.)

Junko Terakado-Tonooka; Yoshinari Ohwaki; Hiromoto Yamakawa; et al. Microbes and Environments 2008. doi:10.1264/jsme2.23.89

Other claims from this paper (5)

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Mitsuaria isolates reduced fungal and oomycete pathogen growth in vitro.

Interactor: MitsuariaRoseatelese0biocontrol_agent
Outcome: fungal and oomycete plant pathogen growthe0
Direction: reducinge0

Not reportedTaxon

Verbatim

e0
“these Mitsuaria and Burkholderia isolates displayed the targeted function by reducing fungal and oomycete plant pathogen growth in vitro”
✓ located verbatim in the source · abstract, characters 1203–1339

Title

Linking Sequence to Function in Soil Bacteria: Sequence-Directed Isolation of Novel Bacteria Contributing to Soilborne Plant Disease Suppression

María-Soledad Benítez; Brian B. McSpadden Gardener Applied and Environmental Microbiology 2008. doi:10.1128/aem.01296-08

Other claims from this paper (9)

Observation Sequences matching TRF M139 and M141 resembled Burkholderiales database entries.
Observation Sequences matching TRF M148 had greater diversity.
Method / resource Sequence-directed culturing recovered Mitsuaria species resembling M139.
Method / resource Sequence-directed culturing recovered Burkholderia species resembling M141.
Observation Burkholderia isolates reduced fungal and oomycete pathogen growth in vitro.
Intervention effect Mitsuaria isolates reduced disease severity in infected tomato seedlings.
Intervention effect Mitsuaria isolates reduced disease severity in infected soybean seedlings.
Intervention effect Burkholderia isolates reduced disease severity in infected tomato seedlings.
Intervention effect Burkholderia isolates reduced disease severity in infected soybean seedlings.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Mitsuaria isolates reduced disease severity in infected tomato seedlings.

Taxon: tomatoSolanum lycopersicume0
Treatment: Mitsuariae0
Interactor: fungal and oomycete plant pathogene0pathogen
Second interactor: MitsuariaRoseatelese0biocontrol_agent
Outcome: disease severitye0
Direction: reducinge0

Not reportedComparator

Verbatim

e0
“these Mitsuaria and Burkholderia isolates displayed the targeted function by reducing fungal and oomycete plant pathogen growth in vitro and reducing disease severity in infected tomato and soybean seedlings.”
✓ located verbatim in the source · abstract, characters 1203–1411

Title

Linking Sequence to Function in Soil Bacteria: Sequence-Directed Isolation of Novel Bacteria Contributing to Soilborne Plant Disease Suppression

María-Soledad Benítez; Brian B. McSpadden Gardener Applied and Environmental Microbiology 2008. doi:10.1128/aem.01296-08

Other claims from this paper (9)

Observation Sequences matching TRF M139 and M141 resembled Burkholderiales database entries.
Observation Sequences matching TRF M148 had greater diversity.
Method / resource Sequence-directed culturing recovered Mitsuaria species resembling M139.
Method / resource Sequence-directed culturing recovered Burkholderia species resembling M141.
Observation Mitsuaria isolates reduced fungal and oomycete pathogen growth in vitro.
Observation Burkholderia isolates reduced fungal and oomycete pathogen growth in vitro.
Intervention effect Mitsuaria isolates reduced disease severity in infected soybean seedlings.
Intervention effect Burkholderia isolates reduced disease severity in infected tomato seedlings.
Intervention effect Burkholderia isolates reduced disease severity in infected soybean seedlings.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Mitsuaria isolates reduced disease severity in infected soybean seedlings.

Taxon: soybeanGlycine maxe0
Treatment: Mitsuariae0
Interactor: fungal and oomycete plant pathogene0pathogen
Second interactor: MitsuariaRoseatelese0biocontrol_agent
Outcome: disease severitye0
Direction: reducinge0

Not reportedComparator

Verbatim

e0
“these Mitsuaria and Burkholderia isolates displayed the targeted function by reducing fungal and oomycete plant pathogen growth in vitro and reducing disease severity in infected tomato and soybean seedlings.”
✓ located verbatim in the source · abstract, characters 1203–1411

Title

Linking Sequence to Function in Soil Bacteria: Sequence-Directed Isolation of Novel Bacteria Contributing to Soilborne Plant Disease Suppression

María-Soledad Benítez; Brian B. McSpadden Gardener Applied and Environmental Microbiology 2008. doi:10.1128/aem.01296-08

Other claims from this paper (9)

Observation Sequences matching TRF M139 and M141 resembled Burkholderiales database entries.
Observation Sequences matching TRF M148 had greater diversity.
Method / resource Sequence-directed culturing recovered Mitsuaria species resembling M139.
Method / resource Sequence-directed culturing recovered Burkholderia species resembling M141.
Observation Mitsuaria isolates reduced fungal and oomycete pathogen growth in vitro.
Observation Burkholderia isolates reduced fungal and oomycete pathogen growth in vitro.
Intervention effect Mitsuaria isolates reduced disease severity in infected tomato seedlings.
Intervention effect Burkholderia isolates reduced disease severity in infected tomato seedlings.
Intervention effect Burkholderia isolates reduced disease severity in infected soybean seedlings.

Observationobservedoriginal resultpositivebasis n/a

Claim · model-written summary

Rhizobacter daucus was named as the causal agent of carrot bacterial gall.

Taxon: carrotsDaucus carotae0
Interactor: Rhizobacter daucusRhizobacter daucie0pathogen
Outcome: bacterial galle0

Verbatim

e0
“The causal agent of bacterial gall of carrots (Daucus carota L.) is named Rhizobacter daucus gen. nov., sp. nov.”
✓ located verbatim in the source · abstract, characters 0–112

Title

Rhizobacter daucus gen. nov., sp. nov., the Causal Agent of Carrot Bacterial Gall

M. Goto; H. Kuwata International Journal of Systematic Bacteriology 1988. doi:10.1099/00207713-38-3-233

Other claims from this paper (1)

Observation Rhizobacter daucus induced gall formation on carrot roots.

Sphaerotilaceae 41 claims

41 claims