By interacting organism › Bacteria › Rhodocyclaceae

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The RCW-HD no-till system favoured nitrogen-fixing bacterial genera.

Taxon: tomatoSolanum lycopersicume1
Treatment: RCW-HD no-till systeme0
Interactor: Terrihabitans, Ferriphaselus, Azospira and RhodopseudomonasRhodopseudomonasAzospiraFerriphaselusTerrihabitanse0symbiont
Outcome: N-fixing bacterial generae0
Direction: favourede0

Not reportedComparator

Verbatim

e0
“The RCW-HD no-till system increased nitrate reduction assimilation (+13 % nrtABC ) and favoured N-fixing bacterial genera such as Terrihabitans, Ferriphaselus, Azospira and Rhodopseudomonas .”
✓ located verbatim in the source · abstract, characters 1402–1593

e1
“The experiment was conducted using tomato ( Solanum lycopersicum ) as a crop species in the Mediterranean region.”
✓ located verbatim in the source · abstract, characters 636–749

Title

Early-stage effects of carbon-rich soil amendments stimulate retention-related nitrogen genes while maintaining nitrogen and yield levels

Johana González-Coria; Michelle-Danielle Ioan; Pierre Hohmann; et al. Soil and Tillage Research 2025. doi:10.1016/j.still.2025.106729

Other claims from this paper (8)

Intervention effect High-dose RCW increased soil organic carbon and microbial biomass.
Intervention effect High-dose RCW with 50 % less organic fertiliser did not reduce nitrogen availability.
Intervention effect High-dose RCW with 50 % less organic fertiliser did not reduce crop productivity.
Intervention effect CTL had 42 % higher pmoA-amoA abundance than RCW-HD.
Intervention effect CTL had 72 % higher pmoC-amoC abundance than RCW-HD.
Intervention effect CTL had 14 % higher nosZ abundance than RCW-HD.
Intervention effect The RCW-HD no-till system increased nitrate reduction assimilation by 13 %.
Association Soil depth significantly influenced 72 % of nitrogen-cycling genes, with key genes more abundant at the surface.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Changes in maize productivity were significantly associated with core species of Rhodocyclaceae.

Taxon: maizeZea mayst0
Interactor: RhodocyclaceaeRhodocyclaceaee7other
Outcome: changes in maize productivitye7

Not reportedDirection

Verbatim

t0
“productivity of maize through intercropping”
✓ located verbatim in the source · title, characters 9–52

e7
“The changes in maize productivity were significantly associated with many core species in the abundant microbial communities mainly belonging to bacterial Actinomycetales and Rhodocyclaceae, fungal Tausonia and Curvularia, and eukaryotic Leptophyryidae and Ochromonadaceae”
✓ located verbatim in the source · abstract, characters 1233–1505

Title

Enhanced productivity of maize through intercropping is associated with community composition, core species, and network complexity of abundant microbiota in rhizosphere soil

Pan Jiang; Yizhe Wang; Yuping Zhang; et al. Geoderma 2024. doi:10.1016/j.geoderma.2024.116786

Other claims from this paper (11)

Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Melatonin increased the abundance of some potentially beneficial endophytic bacteria in apple roots under Cd stress.

Taxon: appleMalus domesticat0
Treatment: melatonine2
Interactor: Ohtaekwangia, Streptomyces, Tabrizicola and AzovibrioStreptomycesAzovibrioOhtaekwangiaTabrizicolae3symbiont
Outcome: abundance of some potentially beneficial endophytic bacteriae3
Direction: increasede3

Not reportedComparator

Verbatim

t0
“Melatonin alleviates cadmium toxicity by regulating root endophytic bacteria community structure and metabolite composition in apple”
✓ located verbatim in the source · title, characters 0–132

e2
“melatonin increased the endophytic bacterial community richness significantly and changed the community structure under Cd stress”
✓ located verbatim in the source · abstract, characters 872–1001

e3
“The abundance of some potentially beneficial endophytic bacteria (Ohtaekwangia, Streptomyces, Tabrizicola and Azovibrio) increased significantly”
✓ located verbatim in the source · abstract, characters 1003–1147

Title

Melatonin alleviates cadmium toxicity by regulating root endophytic bacteria community structure and metabolite composition in apple

Yang Cao; Jiran Zhang; Peihua Du; et al. Tree Physiology 2024. doi:10.1093/treephys/tpae009

Other claims from this paper (10)

Intervention effect Melatonin significantly scavenged reactive oxygen species in apple under Cd stress.
Intervention effect Melatonin restored the photosynthetic system of apple under Cd stress.
Intervention effect Melatonin increased the activity of antioxidant enzymes in apple under Cd stress.
Intervention effect Melatonin reduced Cd concentration in apple roots and leaves.
Intervention effect Melatonin increased the endophytic bacterial community richness in apple under Cd stress.
Intervention effect Melatonin changed the root endophytic bacterial community structure under Cd stress.
Intervention effect Melatonin changed the composition of apple root metabolites under Cd stress.
Intervention effect The relative abundance of some apple root metabolites decreased under melatonin.
Association Some potentially beneficial endophytes may be influenced by specific metabolites in apple.
Mechanism Melatonin may resist Cd stress in apple by depleting root metabolites.

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Rhodocyclaceae was enriched during regrowth of defoliated Minghui63.

Taxon: riceOryza sativae0
Material: Minghui63e0
Interactor: RhodocyclaceaeRhodocyclaceaee0symbiont
Outcome: bacterial family Rhodocyclaceaee0
Direction: enrichede0

Verbatim

e0
“the bacterial family Rhodocyclaceae was specifically enriched during the regrowth of defoliated Minghui63 rice”
✓ located verbatim in the source · abstract, characters 1079–1189

Title

Two rice cultivars recruit different rhizospheric bacteria to promote aboveground regrowth after mechanical defoliation

Changjin Jiang; Fei Wang; Jinling Tian; et al. Microbiology Spectrum 2024. doi:10.1128/spectrum.01254-24

Other claims from this paper (8)

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Bacillus, Azospira and Azospirillum were co-enriched during early rice growth.

Taxon: riceOryza sativat0
Organ / stage: early growth stagee0
Interactor: Bacilluse0symbiont
Second interactor: AzospiraAzospirae0symbiont
Outcome: Bacillus , Azospira , Azospirillume0
Direction: co-enrichede0
Qualifier: Azospirillume0

Verbatim

e0
“Four abundant beneficial bacterial taxa, Bacillus , Azospira , Azospirillum , and Arthrobacter , were co-enriched during the early growth stage”
✓ located verbatim in the source · abstract, characters 928–1071

t0
“rice”
✓ located verbatim in the source · title, characters 86–90

Title

Early inoculation of an endophyte alters the assembly of bacterial communities across rice plant growth stages

Xing Wang; Shan-Wen He; Qing He; et al. Microbiology Spectrum 2023. doi:10.1128/spectrum.04978-22

Other claims from this paper (6)

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Biochar and waste seaweed liquid fertilizer significantly increased Pseudomonas and Azospira abundance in the tomato rhizosphere.

Taxon: tomatoSolanum lycopersicume0
Treatment: Biochar and waste seaweed liquid fertilizere0
Interactor: PseudomonasPseudomonase0symbiont
Second interactor: AzospiraAzospirae0symbiont
Outcome: relative abundance of Pseudomonas and Azospirae0
Direction: increasede0

Not reportedComparator

Verbatim

e0
“Biochar and waste seaweed liquid fertilizer significantly increased the relative abundance of Pseudomonas and Azospira (beneficial bacteria) in tomato rhizosphere.”
✓ located verbatim in the source · abstract, characters 1188–1351

Title

Combinations of waste seaweed liquid fertilizer and biochar on tomato (Solanum lycopersicum L.) seedling growth in an acid-affected soil of Jiaodong Peninsula, China

Xian-chao Shang; Manman Zhang; Yuqin Zhang; et al. Ecotoxicology and Environmental Safety 2023. doi:10.1016/j.ecoenv.2023.115075

Other claims from this paper (9)

Intervention effect RBC significantly elevated tomato dry weight by 23.33 %.
Intervention effect SLF significantly elevated tomato dry weight by 29.93 %.
Intervention effect RBC+SLF significantly elevated tomato dry weight by 63.66 %.
Intervention effect RBC+SLF significantly lowered malondialdehyde content in tomato seedling roots, stems and leaves.
Mechanism The lower malondialdehyde content under RBC+SLF might relate to enhanced proline, soluble sugar and soluble protein contents.
Mechanism Accumulation of zeatin riboside, indole-3-acetic acid and gibberellic acid 3 under RBC+SLF may explain enhanced tomato growth.
Intervention effect RBC, SLF and RBC+SLF improved soil nitrogen and enzyme status in acid-affected soil.
Association Microbial amino acid metabolism was associated with soil properties and enzyme activities.
Recommendation The authors identify biochar and waste seaweed liquid fertilizer as viable conditioners for acid-affected soil.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Melatonin recruited Novosphingobium, Propionivibrio and Cellvibrio candidate beneficial endophytes.

Taxon: applesMalus domesticat0
Treatment: melatonine0
Interactor: NovosphingobiumNovosphingobiume0symbiont
Second interactor: PropionivibrioPropionivibrioe0symbiont
Outcome: Novosphingobiume0
Qualifier: Cellvibrioe0

Not reportedComparatorDirection

Verbatim

e0
“melatonin: Novosphingobium , Propionivibrio , and Cellvibrio”
✓ located verbatim in the source · abstract, characters 510–570

t0
“apples”
✓ located verbatim in the source · title, characters 56–62

Title

Melatonin and dopamine alleviate waterlogging stress in apples by recruiting beneficial endophytes to enhance physiological resilience

Yang Cao; Peihua Du; Yuwei Shang; et al. Journal of Integrative Agriculture 2023. doi:10.1016/j.jia.2023.12.012

Other claims from this paper (12)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Growth-promoting isolates included Rhodocyclaceae bacterium at 3.85%.

Taxon: maizeZea mayse1
Interactor: Rhodocyclaceae bacteriumRhodocyclaceae bacteriume0symbiont
Outcome: Rhodocyclaceae bacteriume0
Value: 3.85%e0

Verbatim

e0
“Rhodocyclaceae bacterium (3.85%)”
✓ located verbatim in the source · abstract, characters 804–836

e1
“maize and soybean plant's rhizosphere”
✓ located verbatim in the source · abstract, characters 383–420

Title

Characterization of plant growth-promoting rhizobacterial isolates associated with food plants in South Africa

Oluwaseun Adeyinka Fasusi; Adenike Eunice Amoo; Olubukola Oluranti Babalola Antonie van Leeuwenhoek 2021. doi:10.1007/s10482-021-01633-4

Other claims from this paper (8)

Observation Growth-promoting isolates were identified as Bacillus spp at 80.77%.
Observation Growth-promoting isolates included Enterococcus spp at 3.85%.
Observation Growth-promoting isolates included Massilia spp at 3.85%.
Observation Growth-promoting isolates included Pseudomonas species at 7.69%.
Observation The bacterial isolates inhibited Fusarium graminearum.
Intervention effect The bacterial isolates promoted maize seed under laboratory conditions.
Intervention effect The bacterial isolates promoted soybean seed under laboratory conditions.
Observation The bacterial isolates showed differing tolerance to pH, temperature, salt and heavy metal.

Observationobservedoriginal resultbasis n/a

Claim · model-written summary

Gram-negative isolates included beta-Proteobacteria genera Azospira, Burkholderia and Delftia

Taxon: teae0
Interactor: AzospiraAzospirae4symbiont
Second interactor: BurkholderiaBurkholderiae4symbiont
Outcome: beta-Proteobacteria generae4

Verbatim

e0
“The diversity elucidation by amplified ribosomal DNA restriction analysis and 16S rDNA sequencing of 96 associative diazotrophs, isolated from the feeder roots of tea on enriched nitrogen-free semisolid media, revealed the predominance of Gram-positive over Gram-negative bacteria within the Kangra valley in Himachal Pradesh, India”
✓ located verbatim in the source · abstract, characters 0–332

e4
“beta-Proteobacteria genera Azospira, Burkholderia, Delftia, Herbaspirillum and Ralstonia”
✓ located verbatim in the source · abstract, characters 702–790

Title

Diversity Analysis of Diazotrophic Bacteria Associated with the Roots of Tea (Camellia sinensis (L.) O. Kuntze)

Arvind Gulati; Swati Sood; Praveen Rahi; et al. Journal of Microbiology and Biotechnology 2011. doi:10.4014/jmb.1012.12022

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bradyrhizobium-related diazotrophs B. vietnamanesis and Azoarcus tolulyticus were observed only in the wheat rhizosphere.

Taxon: wheatTriticum aestivume0
Interactor: B. vietnamanesise0other
Second interactor: Azoarcus tolulyticusAromatoleum tolulyticume0other
Outcome: observed onlye0

Verbatim

e1
“Rhizosphere soils of chickpea (Cicer aeritinum) and wheat (Triticum aestivum) were analysed for the diversity of diazotrophic microorganisms by sequencing the nifH gene”
✓ located verbatim in the source · abstract, characters 0–168

e0
“B. vietnamanesis and Azoarcus tolulyticus were observed only in the wheat rhizosphere”
✓ located verbatim in the source · abstract, characters 1037–1122

Title

Diversity of nifH gene amplified from rhizosphere soil DNA

Sarita, S.; Priefer, Ursula B.; Prell, Jürgen; et al. RWTH Publications (RWTH Aachen) 2008

Other claims from this paper (9)

Rhodocyclaceae 16 claims

16 claims