Claim · model-written summary
The LTR insertion suppressed transcription of BoTPPI-2_BN2.
- Taxon
- cabbage
Brassica oleracea var. capitatae2 - Gene
- BoTPPI-2_BN2 allelee1
- Outcome
- suppressing its transcriptione0
- Qualifier
- long terminal repeate1
Not reportedMaterialCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleTreatmentComparatorSettingDirectionValue
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“thereby suppressing its transcription and exhibiting HTHH phenotype”
e1“presence of a long terminal repeat (LTR; ca. 4.6 kb) in the ninth intron of the BoTPPI-2_BN2 allele”
e2“cabbage (Brassica oleracea var. capitata)”
Title
Hayoung Song; Myungjin Lee; Byung-Ho Hwang; et al. Agronomy 2020. doi:10.3390/agronomy10010116
Other claims from this paper (8)
- Association BoTPPI-2 transcript levels were high in tolerant BN1 but undetectable in susceptible BN2.
- Association BoTPPI-2 expression was unrelated to heat-shock gene expression.
- Association Soft rot resistance was higher in BN1 than BN2.
- Association F2 individuals phenotypically similar to BN1 appeared tolerant, whereas BN2 types were susceptible.
- Observation A roughly 4.6 kb LTR insertion was found in the ninth intron of BoTPPI-2_BN2.
- Observation Apart from the LTR, BoTPPI-2_BN2 and BoTPPI-2_BN1 sequences were almost identical.
- Method / resource The BoTPPI-2 marker identified tolerant genotypes and accounted for at least 80%, but not all, cabbage genotypes.
- Recommendation Additional tolerance markers are needed for perfect selection.