Claim · model-written summary
Upregulated stress response genes formed 15% of the nickel response.
- Taxon
- Jack Pine (Pinus banksiana)
Pinus banksianat0 - Outcome
- response to stresse0
- Value
- 15%e0
Not reportedMaterialGeneCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleTreatmentComparatorSettingDirectionQualifier
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“the highest percentage of upregulated genes in plants exposed to nickel were associated with the response to stress (15%)”
t0“Jack Pine (Pinus banksiana)”
Title
Alistar Moy; Karolina Czajka; Paul Michael; et al. Plants 2023. doi:10.3390/plants12152889
Other claims from this paper (19)
- Method / resource The jack pine transcriptome assigned gene ontology to 25,552 transcripts.
- Observation In water treated jack pine, 55% of transcripts fell in five biological process categories.
- Observation DNA metabolic process accounted for 19.3% of transcripts.
- Observation Stress response accounted for 13.3% of transcripts.
- Observation Chemical stimulus response accounted for 8.7% of transcripts.
- Observation Signal transduction accounted for 7.7% of transcripts.
- Observation Biotic stimulus response accounted for 6.0% of transcripts.
- Observation Nucleotide binding genes accounted for 27.6%.
- Observation Nuclease activity genes accounted for 27.3%.
- Observation Kinase activity genes accounted for 10.3%.
- Observation Sixty two percent of genes were associated with cellular compartments.
- Observation Plasma membrane, cytosol, chloroplast, and extracellular annotations had respective proportions of 21.7, 16.1, 12.4, and 11.9%.
- Intervention effect Nickel upregulated 4128 genes versus water treated controls.
- Intervention effect Nickel downregulated 3754 genes versus water treated controls.
- Observation Upregulated chemical response genes formed 11,1% of the nickel response.
- Observation Upregulated carbohydrate metabolism and catabolism each formed 7.4% of the nickel response.
- Observation Downregulated biosynthesis formed 21% of nickel responsive genes.
- Observation Downregulated carbohydrate metabolism formed 14.3% of nickel responsive genes.
- Observation Downregulated biotic stimulus and stress response genes each formed 10.7% of nickel responsive genes.