Claim · model-written summary
Nickel upregulated 4128 genes versus water treated controls.
- Taxon
- Jack Pine (Pinus banksiana)
Pinus banksianat0 - Treatment
- nickel-treatede0
- Outcome
- genese0
- Direction
- upregulatede0
- Value
- 4128 genese0
- Comparator
- water-treated control plantse0
Not reportedMaterialGeneCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleSettingQualifier
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“there were significant changes in gene expression with a total 4128 genes upregulated and 3754 downregulated genes detected in nickel-treated genotypes compared to water-treated control plants.”
t0“Jack Pine (Pinus banksiana)”
Title
Alistar Moy; Karolina Czajka; Paul Michael; et al. Plants 2023. doi:10.3390/plants12152889
Other claims from this paper (19)
- Method / resource The jack pine transcriptome assigned gene ontology to 25,552 transcripts.
- Observation In water treated jack pine, 55% of transcripts fell in five biological process categories.
- Observation DNA metabolic process accounted for 19.3% of transcripts.
- Observation Stress response accounted for 13.3% of transcripts.
- Observation Chemical stimulus response accounted for 8.7% of transcripts.
- Observation Signal transduction accounted for 7.7% of transcripts.
- Observation Biotic stimulus response accounted for 6.0% of transcripts.
- Observation Nucleotide binding genes accounted for 27.6%.
- Observation Nuclease activity genes accounted for 27.3%.
- Observation Kinase activity genes accounted for 10.3%.
- Observation Sixty two percent of genes were associated with cellular compartments.
- Observation Plasma membrane, cytosol, chloroplast, and extracellular annotations had respective proportions of 21.7, 16.1, 12.4, and 11.9%.
- Intervention effect Nickel downregulated 3754 genes versus water treated controls.
- Observation Upregulated stress response genes formed 15% of the nickel response.
- Observation Upregulated chemical response genes formed 11,1% of the nickel response.
- Observation Upregulated carbohydrate metabolism and catabolism each formed 7.4% of the nickel response.
- Observation Downregulated biosynthesis formed 21% of nickel responsive genes.
- Observation Downregulated carbohydrate metabolism formed 14.3% of nickel responsive genes.
- Observation Downregulated biotic stimulus and stress response genes each formed 10.7% of nickel responsive genes.