Paper · 2013 · Journal of Proteome Research

Shotgun Label-Free Quantitative Proteomics of Water-Deficit-Stressed Midmature Peanut (Arachis hypogaea L.) Seed

Kameswara Rao Kottapalli; Masoud Zabet-Moghaddam; Diane Rowland; et al.

9
claims
24
verbatim quotes
31
citations
3
research areas
—
Not open access

Abstract

Legume seeds and peanuts, in particular, are an inexpensive source of plant proteins and edible oil. A comprehensive understanding of seed metabolism and the effects of water-deficit stress on the incorporation of the main storage reserves in seeds, such as proteins, fatty acids, starch, and secondary metabolites, will enhance our ability to improve seed quality and yield through molecular breeding programs. In the present study, we employed a label-free quantitative proteomics approach to study the functional proteins altered in the midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions. We created a pod-specific proteome database and identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds. Mapping of these differential proteins revealed three candidate biological pathways (glycolysis, sucrose and starch metabolism, and fatty acid metabolism) that were significantly altered due to water-deficit stress. Differential accumulation of proteins from these pathways provides insight into the molecular mechanisms underlying the observed physiological changes, which include reductions in pod yield and biomass, reduced germination, reduced vigor, decreased seed membrane integrity, increase in storage proteins, and decreased total fatty acid content. Some of the proteins encoding rate limiting enzymes of biosynthetic pathways could be utilized by breeders to improve peanut seed production during water-deficit conditions in the field. The data have been deposited to the ProteomeXchange with identifier PXD000308.

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Claims 9

Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Label-free proteomics identified 93 differentially expressed proteins between well-watered and drought-stressed midmature peanut seeds.

Organ / stage
midmature (65-70 days postanthesis) peanut seede0
Treatment
water-deficit stresse0
Outcome
differentially expressed proteinse1
Value
93e1
Comparator
well-waterede1

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Three candidate pathways (glycolysis, sucrose and starch metabolism, and fatty acid metabolism) were significantly altered in peanut seed by water-deficit stress.

Treatment
water-deficit stresse2
Outcome
three candidate biological pathways (glycolysis, sucrose and starch metabolism, and fatty acid metabolism)e2
Comparator
well-waterede1

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
e2

“Mapping of these differential proteins revealed three candidate biological pathways (glycolysis, sucrose and starch metabolism, and fatty acid metabolism) that were significantly altered due to water-deficit stress”

✓ located verbatim in the source · abstract, characters 823–1037 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Water-deficit stress reduced pod yield and biomass of peanut.

Treatment
water-deficit stresse0
Outcome
pod yield and biomasse3
Direction
reductionse3
Comparator
well-waterede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
e3

“which include reductions in pod yield and biomass, reduced germination, reduced vigor, decreased seed membrane integrity, increase in storage proteins, and decreased total fatty acid content”

✓ located verbatim in the source · abstract, characters 1191–1381 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Water-deficit stress reduced germination of peanut seed.

Treatment
water-deficit stresse0
Outcome
germinatione3
Direction
reducede3
Comparator
well-waterede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
e3

“which include reductions in pod yield and biomass, reduced germination, reduced vigor, decreased seed membrane integrity, increase in storage proteins, and decreased total fatty acid content”

✓ located verbatim in the source · abstract, characters 1191–1381 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Water-deficit stress reduced vigor of peanut seed.

Treatment
water-deficit stresse0
Outcome
vigore3
Direction
reducede3
Comparator
well-waterede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
e3

“which include reductions in pod yield and biomass, reduced germination, reduced vigor, decreased seed membrane integrity, increase in storage proteins, and decreased total fatty acid content”

✓ located verbatim in the source · abstract, characters 1191–1381 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Water-deficit stress decreased seed membrane integrity of peanut seed.

Treatment
water-deficit stresse0
Outcome
seed membrane integritye3
Direction
decreasede3
Comparator
well-waterede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
e3

“which include reductions in pod yield and biomass, reduced germination, reduced vigor, decreased seed membrane integrity, increase in storage proteins, and decreased total fatty acid content”

✓ located verbatim in the source · abstract, characters 1191–1381 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Water-deficit stress increased storage proteins in peanut seed.

Treatment
water-deficit stresse0
Outcome
storage proteinse3
Direction
increasee3
Comparator
well-waterede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
e3

“which include reductions in pod yield and biomass, reduced germination, reduced vigor, decreased seed membrane integrity, increase in storage proteins, and decreased total fatty acid content”

✓ located verbatim in the source · abstract, characters 1191–1381 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Water-deficit stress decreased total fatty acid content of peanut seed.

Treatment
water-deficit stresse0
Outcome
total fatty acid contente3
Direction
decreasede3
Comparator
well-waterede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e0

“midmature (65-70 days postanthesis) peanut seed grown under water-deficit stress conditions”

✓ located verbatim in the source · abstract, characters 540–631 · show in text ↑
e1

“identified 93 nonredundant, statistically significant, and differentially expressed proteins between well-watered and drought-stressed seeds”

✓ located verbatim in the source · abstract, characters 681–821 · show in text ↑
e3

“which include reductions in pod yield and biomass, reduced germination, reduced vigor, decreased seed membrane integrity, increase in storage proteins, and decreased total fatty acid content”

✓ located verbatim in the source · abstract, characters 1191–1381 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

Proteins encoding rate-limiting enzymes of biosynthetic pathways could be used by breeders to improve peanut seed production under water-deficit conditions in the field.

Treatment
water-deficit conditionse4
Outcome
peanut seed productione4
Setting
in the fielde4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis hypogaea
Arachis hypogaea · Taxon葉子 · CC0 · iNaturalist ↗

Verbatim

e4

“Some of the proteins encoding rate limiting enzymes of biosynthetic pathways could be utilized by breeders to improve peanut seed production during water-deficit conditions in the field”

✓ located verbatim in the source · abstract, characters 1383–1568 · show in text ↑

drought · quality: oil · Arachis hypogaea (peanut)Results differ

8 papers: 3 positive, 5 negative or no effect

4 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

4 papers more in this group

See all 8 papers →

drought · growth · Arachis hypogaea (peanut)Results differ

58 papers: 20 positive, 38 negative or no effect

37 papers in the same direction as this paper · 20 in the opposite direction

  1. positive
  2. positive
  3. positive

54 papers more in this group

See all 58 papers →

drought · yield · Arachis hypogaea (peanut)Results differ

79 papers: 24 positive, 55 negative or no effect

54 papers in the same direction as this paper · 24 in the opposite direction

  1. positive
    Groundnut experienced lower drought-induced yield reduction than cowpea and green gram.

    Global Synthesis of Drought Effects on Food Legume Production · 2015 · compared with legumes such as cowpea (Vigna unguiculata) and green gram (Vigna radiate)

    Opposite direction

  2. positive
  3. positive

75 papers more in this group

See all 79 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.