Paper · 2012 · Molecular Plant-Microbe Interactions

Comparative Analysis of Transcriptomic and Hormonal Responses to Compatible and Incompatible Plant-Virus Interactions that Lead to Cell Death

Remedios Pacheco; Alberto García-Marcos; Aranzazu Manzano; et al.

6
claims
11
verbatim quotes
75
citations
3
research areas
✓
Open access · cc-by-sa

Abstract

Hypersensitive response-related programmed cell death (PCD) has been extensively analyzed in various plant-virus interactions. However, little is known about the changes in gene expression and phytohormone levels associated with cell death caused by compatible viruses. The synergistic interaction of Potato virus X (PVX) with a number of Potyvirus spp. results in increased symptoms that lead to systemic necrosis (SN) in Nicotiana benthamiana. Here, we show that SN induced by a PVX recombinant virus expressing a potyviral helper component-proteinase (HC-Pro) gene is associated with PCD. We have also compared transcriptomic and hormonal changes that occur in response to a compatible synergistic virus interaction that leads to SN, a systemic incompatible interaction conferred by the Tobacco mosaic virus-resistance gene N, and a PCD response conditioned by depletion of proteasome function. Our analysis indicates that the SN response clusters with the incompatible response by the similarity of their overall gene expression profiles. However, the expression profiles of both defense-related genes and hormone-responsive genes, and also the relative accumulation of several hormones in response to SN, relate more closely to the response to depletion of proteasome function than to that elicited by the incompatible interaction. This suggests a potential contribution of proteasome dysfunction to the increased pathogenicity observed in PVX-Potyvirus mixed infections. Furthermore, silencing of coronatine insensitive 1, a gene involved in jasmonate perception, in N. benthamiana accelerated cell death induced by PVX expressing HC-Pro.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

PVX expressing HC-Pro induced systemic necrosis associated with programmed cell death.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Interactor
PVXPotato virus Xe0pathogen
Gene
potyviral helper component-proteinase (HC-Pro) genee0
Outcome
PCDe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“SN induced by a PVX recombinant virus expressing a potyviral helper component-proteinase (HC-Pro) gene is associated with PCD”

✓ located verbatim in the source · abstract, characters 465–590 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 423–444 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Systemic necrosis and the incompatible response clustered by overall gene expression profiles.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Outcome
similarity of their overall gene expression profilese0
Comparator
incompatible responsee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the SN response clusters with the incompatible response by the similarity of their overall gene expression profiles”

✓ located verbatim in the source · abstract, characters 926–1041 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 423–444 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Defense and hormone responsive gene profiles during systemic necrosis were closer to proteasome depletion than to incompatible infection.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Outcome
expression profiles of both defense-related genes and hormone-responsive genese0
Direction
more closelye0
Comparator
response to depletion of proteasome functione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the expression profiles of both defense-related genes and hormone-responsive genes, and also the relative accumulation of several hormones in response to SN, relate more closely to the response to depletion of proteasome function than to that elicited by the incompatible interaction”

✓ located verbatim in the source · abstract, characters 1052–1335 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 423–444 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Hormone accumulation during systemic necrosis was closer to proteasome depletion than to the incompatible interaction.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Outcome
relative accumulation of several hormonese0
Direction
more closelye0
Comparator
response to depletion of proteasome functione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the relative accumulation of several hormones in response to SN, relate more closely to the response to depletion of proteasome function than to that elicited by the incompatible interaction”

✓ located verbatim in the source · abstract, characters 1145–1335 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 423–444 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

The authors suggest proteasome dysfunction may contribute to pathogenicity in mixed PVX-Potyvirus infections.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Interactor
PVX-Potyviruse0pathogen
Outcome
increased pathogenicitye0
Qualifier
proteasome dysfunctione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“potential contribution of proteasome dysfunction to the increased pathogenicity observed in PVX-Potyvirus mixed infections”

✓ located verbatim in the source · abstract, characters 1353–1475 · show in text ↑
t0

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 423–444 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Silencing coronatine insensitive 1 accelerated cell death induced by PVX expressing HC-Pro.

Taxon
N. benthamianaNicotiana benthamianae0
Treatment
silencing of coronatine insensitive 1e0
Interactor
PVXPotato virus Xe0pathogen
Gene
coronatine insensitive 1e0
Outcome
cell death induced by PVX expressing HC-Proe0
Direction
acceleratede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“silencing of coronatine insensitive 1, a gene involved in jasmonate perception, in N. benthamiana accelerated cell death induced by PVX expressing HC-Pro”

✓ located verbatim in the source · abstract, characters 1490–1643 · show in text ↑

loss of function · Potato virus X · Nicotiana benthamianaPositive and negative results

15 papers: 8 positive, 7 negative or no effect

6 papers in the same direction as this paper · 8 in the opposite direction

  1. positive
  2. positive
  3. positive

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.