Paper · 2004 · PLANT PHYSIOLOGY

Diurnal Changes in the Transcriptome Encoding Enzymes of Starch Metabolism Provide Evidence for Both Transcriptional and Posttranscriptional Regulation of Starch Metabolism in Arabidopsis Leaves

Steven M. Smith; Daniel C. Fulton; Tansy Chia; et al.

7
claims
14
verbatim quotes
436
citations
3
research areas
✓
Open access

Abstract

To gain insight into the synthesis and functions of enzymes of starch metabolism in leaves of Arabidopsis L. Heynth, Affymetrix microarrays were used to analyze the transcriptome throughout the diurnal cycle. Under the conditions employed, transitory leaf starch is degraded progressively during a 12-h dark period, and then accumulates during the following 12-h light period. Transcripts encoding enzymes of starch synthesis changed relatively little in amount over 24 h except for two starch synthases, granule bound starch synthase and starch synthase II, which increased appreciably during the transition from dark to light. The increase in RNA encoding granule-bound starch synthase may reflect the extensive destruction of starch granules in the dark. Transcripts encoding several enzymes putatively involved in starch breakdown showed a coordinated decline in the dark followed by rapid accumulation in the light. Despite marked changes in their transcript levels, the amounts of some enzymes of starch metabolism do not change appreciably through the diurnal cycle. Posttranscriptional regulation is essential in the maintenance of amounts of enzymes and the control of their activities in vivo. Even though the relationships between transcript levels, enzyme activity, and diurnal metabolism of starch metabolism are complex, the presence of some distinctive diurnal patterns of transcripts for enzymes known to be involved in starch metabolism facilitates the identification of other proteins that may participate in this process.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

Leaf starch fell during darkness and accumulated in light.

Taxon
Arabidopsis L. Heynthe1
Organ / stage
leafe0
Outcome
transitory leaf starche0
Direction
degraded progressivelye0

Verbatim

e0

“transitory leaf starch is degraded progressively during a 12-h dark period, and then accumulates during the following 12-h light period.”

✓ located verbatim in the source · abstract, characters 240–376 · show in text ↑
e1

“Arabidopsis L. Heynth”

✓ located verbatim in the source · abstract, characters 94–115 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Most starch synthesis enzyme transcripts changed little over 24 h.

Taxon
Arabidopsis L. Heynthe1
Outcome
Transcripts encoding enzymes of starch synthesise0
Direction
changed relatively littlee0

Verbatim

e0

“Transcripts encoding enzymes of starch synthesis changed relatively little in amount over 24 h”

✓ located verbatim in the source · abstract, characters 377–471 · show in text ↑
e1

“Arabidopsis L. Heynth”

✓ located verbatim in the source · abstract, characters 94–115 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Granule bound starch synthase and starch synthase II transcripts increased at dark-to-light transition.

Taxon
Arabidopsis L. Heynthe1
Gene
granule bound starch synthase and starch synthase IIe0
Outcome
granule bound starch synthase and starch synthase IIe0
Direction
increased appreciablye0

Verbatim

e0

“granule bound starch synthase and starch synthase II, which increased appreciably during the transition from dark to light.”

✓ located verbatim in the source · abstract, characters 505–628 · show in text ↑
e1

“Arabidopsis L. Heynth”

✓ located verbatim in the source · abstract, characters 94–115 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Several starch breakdown enzyme transcripts declined in dark and accumulated rapidly in light.

Taxon
Arabidopsis L. Heynthe1
Outcome
Transcripts encoding several enzymes putatively involved in starch breakdowne0
Direction
decline in the dark followed by rapid accumulation in the lighte0

Verbatim

e0

“Transcripts encoding several enzymes putatively involved in starch breakdown showed a coordinated decline in the dark followed by rapid accumulation in the light.”

✓ located verbatim in the source · abstract, characters 758–920 · show in text ↑
e1

“Arabidopsis L. Heynth”

✓ located verbatim in the source · abstract, characters 94–115 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Amounts of some starch metabolism enzymes changed little despite transcript changes.

Taxon
Arabidopsis L. Heynthe1
Gene
enzymes of starch metabolisme0
Outcome
amounts of some enzymes of starch metabolisme0
Direction
do not change appreciablye0

Verbatim

e0

“Despite marked changes in their transcript levels, the amounts of some enzymes of starch metabolism do not change appreciably through the diurnal cycle.”

✓ located verbatim in the source · abstract, characters 921–1073 · show in text ↑
e1

“Arabidopsis L. Heynth”

✓ located verbatim in the source · abstract, characters 94–115 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Authors infer posttranscriptional regulation maintains enzyme abundance and controls activity.

Taxon
Arabidopsis L. Heynthe1
Outcome
maintenance of amounts of enzymes and the control of their activitiese0
Qualifier
Posttranscriptional regulatione0

Not reportedDirection

Verbatim

e0

“Posttranscriptional regulation is essential in the maintenance of amounts of enzymes and the control of their activities in vivo.”

✓ located verbatim in the source · abstract, characters 1074–1203 · show in text ↑
e1

“Arabidopsis L. Heynth”

✓ located verbatim in the source · abstract, characters 94–115 · show in text ↑
Method / resourceauthor interpretationoriginal resultmeasured

Claim · model-written summary

Distinctive transcript patterns help identify other proteins in starch metabolism.

Taxon
Arabidopsis L. Heynthe1
Outcome
identification of other proteins that may participate in this processe0
Comparator
enzymes known to be involved in starch metabolisme0

Verbatim

e0

“the presence of some distinctive diurnal patterns of transcripts for enzymes known to be involved in starch metabolism facilitates the identification of other proteins that may participate in this process.”

✓ located verbatim in the source · abstract, characters 1335–1540 · show in text ↑
e1

“Arabidopsis L. Heynth”

✓ located verbatim in the source · abstract, characters 94–115 · show in text ↑