Paper · 2013 · Proceedings of the National Academy of Sciences

Rapidly evolving R genes in diverse grass species confer resistance to rice blast disease

Sihai Yang; Jing Li; Xiaohui Zhang; et al.

6
claims
10
verbatim quotes
136
citations
2
research areas
✓
Open access

Abstract

We show that the genomes of maize, sorghum, and brachypodium contain genes that, when transformed into rice, confer resistance to rice blast disease. The genes are resistance genes (R genes) that encode proteins with nucleotide-binding site (NBS) and leucine-rich repeat (LRR) domains (NBS-LRR proteins). By using criteria associated with rapid molecular evolution, we identified three rapidly evolving R-gene families in these species as well as in rice, and transformed a randomly chosen subset of these genes into rice strains known to be sensitive to rice blast disease caused by the fungus Magnaporthe oryzae. The transformed strains were then tested for sensitivity or resistance to 12 diverse strains of M. oryzae. A total of 15 functional blast R genes were identified among 60 NBS-LRR genes cloned from maize, sorghum, and brachypodium; and 13 blast R genes were obtained from 20 NBS-LRR paralogs in rice. These results show that abundant blast R genes occur not only within species but also among species, and that the R genes in the same rapidly evolving gene family can exhibit an effector response that confers resistance to rapidly evolving fungal pathogens. Neither conventional evolutionary conservation nor conventional evolutionary convergence supplies a satisfactory explanation of our findings. We suggest a unique mechanism termed "constrained divergence," in which R genes and pathogen effectors can follow only limited evolutionary pathways to increase fitness. Our results open avenues for R-gene identification that will help to elucidate R-gene vs. effector mechanisms and may yield new sources of durable pathogen resistance.

Abstract from the paper’s OpenAlex record, shown for indexing and research. Copyright remains with the authors or the publisher. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three rapidly evolving R gene families were identified across the studied grasses and rice.

Taxon
maize, sorghum, and brachypodiumSorghumZea maysBrachypodiume2
Gene
R-gene familiese0
Outcome
three rapidly evolving R-gene familiese0
Value
threee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗
Brachypodium
Brachypodium · Taxon · picture of the genus (one of its species)Neil Harris, University of Alberta · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“we identified three rapidly evolving R-gene families in these species as well as in rice”

✓ located verbatim in the source · abstract, characters 366–454 · show in text ↑
e2

“A total of 15 functional blast R genes were identified among 60 NBS-LRR genes cloned from maize, sorghum, and brachypodium”

✓ located verbatim in the source · abstract, characters 722–844 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Fifteen functional blast resistance genes were identified among 60 genes cloned from maize, sorghum and brachypodium.

Taxon
maize, sorghum, and brachypodiumSorghumZea maysBrachypodiume0
Gene
blast R genese0
Outcome
functional blast R genese0
Value
15e0
Qualifier
among 60 NBS-LRR genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗
Brachypodium
Brachypodium · Taxon · picture of the genus (one of its species)Neil Harris, University of Alberta · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A total of 15 functional blast R genes were identified among 60 NBS-LRR genes cloned from maize, sorghum, and brachypodium”

✓ located verbatim in the source · abstract, characters 722–844 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Thirteen blast resistance genes were obtained from 20 rice NBS LRR paralogs.

Gene
blast R genese0
Outcome
blast R genese0
Value
13e0
Qualifier
20 NBS-LRR paralogse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“13 blast R genes were obtained from 20 NBS-LRR paralogs in rice”

✓ located verbatim in the source · abstract, characters 850–913 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Resistance genes from the grass species conferred rice blast resistance when transformed into rice.

Treatment
transformed into ricee0
Interactor
Magnaporthe oryzaePyricularia oryzaee1pathogen
Gene
genese0
Outcome
resistance to rice blast diseasee0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Pyricularia oryzae
Pyricularia oryzae · InteractorJie-Hao Ou · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“the genomes of maize, sorghum, and brachypodium contain genes that, when transformed into rice, confer resistance to rice blast disease”

✓ located verbatim in the source · abstract, characters 13–148 · show in text ↑
e1

“rice blast disease caused by the fungus Magnaporthe oryzae”

✓ located verbatim in the source · abstract, characters 555–613 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Resistance genes within the same rapidly evolving family can confer resistance through an effector response.

Interactor
Magnaporthe oryzaePyricularia oryzaee1pathogen
Gene
R genese0
Outcome
resistance to rapidly evolving fungal pathogense0
Qualifier
effector responsee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Pyricularia oryzae
Pyricularia oryzae · InteractorJie-Hao Ou · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“the R genes in the same rapidly evolving gene family can exhibit an effector response that confers resistance to rapidly evolving fungal pathogens”

✓ located verbatim in the source · abstract, characters 1025–1171 · show in text ↑
e1

“rice blast disease caused by the fungus Magnaporthe oryzae”

✓ located verbatim in the source · abstract, characters 555–613 · show in text ↑
Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

The authors propose constrained divergence as a possible explanation for limited evolutionary pathways of resistance genes and pathogen effectors.

Interactor
Magnaporthe oryzaePyricularia oryzaee1pathogen
Gene
R genese0
Outcome
limited evolutionary pathways to increase fitnesse0
Qualifier
constrained divergencee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Pyricularia oryzae
Pyricularia oryzae · InteractorJie-Hao Ou · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“We suggest a unique mechanism termed "constrained divergence," in which R genes and pathogen effectors can follow only limited evolutionary pathways to increase fitness”

✓ located verbatim in the source · abstract, characters 1315–1483 · show in text ↑
e1

“rice blast disease caused by the fungus Magnaporthe oryzae”

✓ located verbatim in the source · abstract, characters 555–613 · show in text ↑

transgenic · Pyricularia oryzae · Oryza sativa (rice)Positive and negative results

7 papers: 4 positive, 3 negative or no effect

3 papers in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. no effect
  3. no effect

3 papers more in this group

See all 7 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.