Paper · 2013 · International Journal of Molecular Sciences

Genome-Wide Analysis of Respiratory Burst Oxidase Homologs in Grape (Vitis vinifera L.)

Chenxia Cheng; Xiaozhao Xu; Min Gao; et al.

9
claims
25
verbatim quotes
64
citations
4
research areas
✓
Open access · cc-by

Abstract

Plant respiratory burst oxidase homolog (rboh) genes appear to play crucial roles in plant development, defense reactions and hormone signaling. In this study, a total of seven rboh genes from grape were identified and characterized. Genomic structure and predicted protein sequence analysis indicated that the sequences of plant rboh genes are highly conserved. Synteny analysis demonstrated that several Vvrboh genes were found in corresponding syntenic blocks of Arabidopsis, suggesting that these genes arose before the divergence of the respective lineages. The expression pattern of Vvrboh genes in different tissues was assessed by qRT-PCR and two were constitutively expressed in all tissues tested. The expression profiles were similarly analyzed following exposure to various stresses and hormone treatments. It was shown that the expression levels of VvrbohA, VvrbohB and VvrbohC1 were significantly increased by salt and drought treatments. VvrbohB, VvrbohC2, and VvrbohD exhibited a dramatic up-regulation after powdery mildew (Uncinula necator (Schw.) Burr.) inoculation, while VvrbohH was down-regulated. Finally, salicylic acid treatment strongly stimulated the expression of VvrbohD and VvrbohH, while abscisic acid treatment induced the expression of VvrbohB and VvrbohH. These results demonstrate that the expression patterns of grape rboh genes exhibit diverse and complex stress-response expression signatures.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Observationobservedoriginal resultmeasured

Claim · model-written summary

Seven grape rboh genes were identified and characterized.

Taxon
grapee0
Gene
rboh genese0
Outcome
seven rboh genese0
Value
sevene0

Verbatim

e0

“a total of seven rboh genes from grape were identified and characterized”

✓ located verbatim in the source · abstract, characters 160–232 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Plant rboh sequences were highly conserved.

Taxon
grapet0
Gene
rboh genese0
Outcome
highly conservede0

Verbatim

e0

“sequences of plant rboh genes are highly conserved”

✓ located verbatim in the source · abstract, characters 311–361 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Several Vvrboh genes occupy corresponding Arabidopsis syntenic blocks.

Taxon
grapet0
Gene
Vvrboh genese0
Outcome
corresponding syntenic blocks of Arabidopsise0

Verbatim

e0

“several Vvrboh genes were found in corresponding syntenic blocks of Arabidopsis”

✓ located verbatim in the source · abstract, characters 398–477 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Two Vvrboh genes were constitutively expressed in tested tissues.

Taxon
grapet0
Gene
Vvrboh genese0
Outcome
constitutively expressed in all tissues testede0
Value
twoe0

Verbatim

e0

“The expression pattern of Vvrboh genes in different tissues was assessed by qRT-PCR and two were constitutively expressed in all tissues tested”

✓ located verbatim in the source · abstract, characters 563–706 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Salt and drought significantly increased VvrbohA, VvrbohB and VvrbohC1 expression.

Taxon
grapet0
Treatment
salt and drought treatmentse0
Gene
VvrbohA, VvrbohB and VvrbohC1e0
Outcome
expression levelse0
Direction
increasede0

Not reportedComparator

Verbatim

e0

“expression levels of VvrbohA, VvrbohB and VvrbohC1 were significantly increased by salt and drought treatments”

✓ located verbatim in the source · abstract, characters 841–951 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Powdery mildew inoculation upregulated VvrbohB, VvrbohC2 and VvrbohD.

Taxon
grapet0
Treatment
powdery mildew (Uncinula necator (Schw.) Burr.) inoculatione0
Interactor
Uncinula necator (Schw.) Burr.Erysiphe necatore0pathogen
Gene
VvrbohB, VvrbohC2, and VvrbohDe0
Outcome
up-regulatione0
Direction
up-regulatione0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Erysiphe necator
Erysiphe necator · Interactor · picture from its Wikimedia Commons categoryBenjamin Vanegtern · CC0 · Wikimedia Commons ↗

Verbatim

e0

“VvrbohB, VvrbohC2, and VvrbohD exhibited a dramatic up-regulation after powdery mildew (Uncinula necator (Schw.) Burr.) inoculation”

✓ located verbatim in the source · abstract, characters 953–1084 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Powdery mildew inoculation downregulated VvrbohH.

Taxon
grapet0
Treatment
powdery mildewe0
Interactor
powdery mildewe0pathogen
Gene
VvrbohHe0
Outcome
VvrbohHe0
Direction
down-regulatede0

Not reportedComparator

Verbatim

e0

“powdery mildew (Uncinula necator (Schw.) Burr.) inoculation, while VvrbohH was down-regulated”

✓ located verbatim in the source · abstract, characters 1025–1118 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Salicylic acid stimulated VvrbohD and VvrbohH expression.

Taxon
grapet0
Treatment
salicylic acid treatmente0
Gene
VvrbohD and VvrbohHe0
Outcome
expressione0
Direction
stimulatede0

Not reportedComparator

Verbatim

e0

“salicylic acid treatment strongly stimulated the expression of VvrbohD and VvrbohH”

✓ located verbatim in the source · abstract, characters 1129–1211 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Abscisic acid induced VvrbohB and VvrbohH expression.

Taxon
grapet0
Treatment
abscisic acid treatmente0
Gene
VvrbohB and VvrbohHe0
Outcome
expressione0
Direction
inducede0

Not reportedComparator

Verbatim

e0

“abscisic acid treatment induced the expression of VvrbohB and VvrbohH”

✓ located verbatim in the source · abstract, characters 1219–1288 · show in text ↑
t0

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑
t1

“Grape”

✓ located verbatim in the source · title, characters 62–67 · show in text ↑

salinity · molecular: expression · VitisPositive and negative results

7 papers: 3 positive, 4 negative or no effect

2 papers in the same direction as this paper · 4 in the opposite direction

  1. negative
  2. no effect
  3. no effect

3 papers more in this group

See all 7 papers →

drought · molecular: expression · VitisPositive and negative results

18 papers: 12 positive, 6 negative or no effect

11 papers in the same direction as this paper · 6 in the opposite direction

  1. no effect
  2. negative
  3. no effect

14 papers more in this group

See all 18 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.