Paper · 2013 · Journal of Experimental Botany

Virus-induced gene silencing of Arabidopsis thaliana gene homologues in wheat identifies genes conferring improved drought tolerance

Harish Manmathan; Dale Shaner; Jacob Snelling; et al.

7
claims
13
verbatim quotes
96
citations
2
research areas
✓
Open access · other-oa

Abstract

In a non-model staple crop like wheat (Triticum aestivumI L.), functional validation of potential drought stress responsive genes identified in Arabidopsis could provide gene targets for breeding. Virus-induced gene silencing (VIGS) of genes of interest can overcome the inherent problems of polyploidy and limited transformation potential that hamper functional validation studies in wheat. In this study, three potential candidate genes shown to be involved in abiotic stress response pathways in Arabidopsis thaliana were selected for VIGS experiments in wheat. These include Era1 (enhanced response to abscisic acid), Cyp707a (ABA 8'-hydroxylase), and Sal1 (inositol polyphosphate 1-phosphatase). Gene homologues for these three genes were identified in wheat and cloned in the viral vector barley stripe mosaic virus (BSMV) in the antisense direction, followed by rub inoculation of BSMV viral RNA transcripts onto wheat plants. Quantitative real-time PCR showed that VIGS-treated wheat plants had significant reductions in target gene transcripts. When VIGS-treated plants generated for Era1 and Sal1 were subjected to limiting water conditions, they showed increased relative water content, improved water use efficiency, reduced gas exchange, and better vigour compared to water-stressed control plants inoculated with RNA from the empty viral vector (BSMV0). In comparison, the Cyp707a-silenced plants showed no improvement over BSMV0-inoculated plants under limited water condition. These results indicate that Era1 and Sal1 play important roles in conferring drought tolerance in wheat. Other traits affected by Era1 silencing were also studied. Delayed seed germination in Era1-silenced plants suggests this gene may be a useful target for developing resistance to pre-harvest sprouting.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

Wheat homologues of Era1, Cyp707a and Sal1 were identified.

Gene
Era1e1
Outcome
Gene homologues for these three genes were identifiede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Gene homologues for these three genes were identified in wheat”

✓ located verbatim in the source · abstract, characters 701–763 · show in text ↑
e1

“These include Era1 (enhanced response to abscisic acid), Cyp707a (ABA 8'-hydroxylase), and Sal1 (inositol polyphosphate 1-phosphatase)”

✓ located verbatim in the source · abstract, characters 565–699 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

VIGS significantly reduced target gene transcripts in wheat.

Treatment
VIGS-treatede0
Outcome
target gene transcriptse0
Direction
reductionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“VIGS-treated wheat plants had significant reductions in target gene transcripts”

✓ located verbatim in the source · abstract, characters 973–1052 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Era1 silencing improved water content, water use efficiency and vigour during water limitation.

Treatment
VIGS-treated plants generated for Era1e0
Gene
Era1e0
Outcome
relative water content, improved water use efficiencye0
Direction
increasede0
Qualifier
limiting water conditionse0
Comparator
water-stressed control plants inoculated with RNA from the empty viral vector (BSMV0)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“When VIGS-treated plants generated for Era1 and Sal1 were subjected to limiting water conditions, they showed increased relative water content, improved water use efficiency, reduced gas exchange, and better vigour compared to water-stressed control plants inoculated with RNA from the empty viral vector (BSMV0)”

✓ located verbatim in the source · abstract, characters 1054–1366 · show in text ↑
e1

“wheat (Triticum aestivumI L.)”

✓ located verbatim in the source · abstract, characters 32–61 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Sal1 silencing improved water content, water use efficiency and vigour during water limitation.

Treatment
VIGS-treated plants generated for Era1 and Sal1e0
Gene
Sal1e0
Outcome
relative water content, improved water use efficiencye0
Direction
increasede0
Qualifier
limiting water conditionse0
Comparator
water-stressed control plants inoculated with RNA from the empty viral vector (BSMV0)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“When VIGS-treated plants generated for Era1 and Sal1 were subjected to limiting water conditions, they showed increased relative water content, improved water use efficiency, reduced gas exchange, and better vigour compared to water-stressed control plants inoculated with RNA from the empty viral vector (BSMV0)”

✓ located verbatim in the source · abstract, characters 1054–1366 · show in text ↑
e1

“wheat (Triticum aestivumI L.)”

✓ located verbatim in the source · abstract, characters 32–61 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Era1 and Sal1 silencing reduced gas exchange during water limitation.

Treatment
VIGS-treated plants generated for Era1 and Sal1e0
Gene
Era1 and Sal1e0
Outcome
gas exchangee0
Direction
reducede0
Comparator
water-stressed control plants inoculated with RNA from the empty viral vector (BSMV0)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“When VIGS-treated plants generated for Era1 and Sal1 were subjected to limiting water conditions, they showed increased relative water content, improved water use efficiency, reduced gas exchange, and better vigour compared to water-stressed control plants inoculated with RNA from the empty viral vector (BSMV0)”

✓ located verbatim in the source · abstract, characters 1054–1366 · show in text ↑
e1

“wheat (Triticum aestivumI L.)”

✓ located verbatim in the source · abstract, characters 32–61 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Cyp707a silencing gave no improvement under limited water.

Treatment
Cyp707a-silencede0
Gene
Cyp707ae0
Outcome
improvemente0
Direction
no improvemente0
Comparator
BSMV0-inoculated plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the Cyp707a-silenced plants showed no improvement over BSMV0-inoculated plants under limited water condition”

✓ located verbatim in the source · abstract, characters 1383–1491 · show in text ↑
e1

“wheat (Triticum aestivumI L.)”

✓ located verbatim in the source · abstract, characters 32–61 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Era1 silencing delayed seed germination.

Treatment
Era1-silencede0
Gene
Era1e0
Outcome
seed germinatione0
Direction
Delayede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Delayed seed germination in Era1-silenced plants”

✓ located verbatim in the source · abstract, characters 1657–1705 · show in text ↑
e1

“wheat (Triticum aestivumI L.)”

✓ located verbatim in the source · abstract, characters 32–61 · show in text ↑

loss of function · physiology: water · Triticum aestivum (wheat)Positive and negative results

5 papers: 3 positive, 2 negative or no effect

2 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. positive
  3. negative

1 paper more in this group

See all 5 papers →

loss of function · molecular: expression · Triticum aestivum (wheat)Positive and negative results

34 papers: 11 positive, 23 negative or no effect

10 papers in the same direction as this paper · 23 in the opposite direction

  1. negative
  2. negative
  3. negative

30 papers more in this group

See all 34 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.