Paper · 2012 · BMC Plant Biology

Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening

Tianbao Yang; Hui Peng; Bruce D Whitaker; et al.

11
claims
21
verbatim quotes
130
citations
2
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: Fruit ripening is a complicated development process affected by a variety of external and internal cues. It is well established that calcium treatment delays fruit ripening and senescence. However, the underlying molecular mechanisms remain unclear. RESULTS: Previous studies have shown that calcium/calmodulin-regulated SR/CAMTAs are important for modulation of disease resistance, cold sensitivity and wounding response in vegetative tissues. To study the possible roles of this gene family in fruit development and ripening, we cloned seven SR/CAMTAs, designated as SlSRs, from tomato, a model fruit-bearing crop. All seven genes encode polypeptides with a conserved DNA-binding domain and a calmodulin-binding site. Calmodulin specifically binds to the putative targeting site in a calcium-dependent manner. All SlSRs were highly yet differentially expressed during fruit development and ripening. Most notably, the expression of SlSR2 was scarcely detected at the mature green and breaker stages, two critical stages of fruit development and ripening; and SlSR3L and SlSR4 were expressed exclusively in fruit tissues. During the developmental span from 10 to 50 days post anthesis, the expression profiles of all seven SlSRs were dramatically altered in ripening mutant rin compared with wildtype fruit. By contrast, only minor alterations were noted for ripening mutant nor and Nr fruit. In addition, ethylene treatment of mature green wildtype fruit transiently stimulated expression of all SlSRs within one to two hours. CONCLUSIONS: This study indicates that SlSR expression is influenced by both the Rin-mediated developmental network and ethylene signaling. The results suggest that calcium signaling is involved in the regulation of fruit development and ripening through calcium/calmodulin/SlSR interactions.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 11

Observationobservedoriginal resultmeasured

Claim · model-written summary

Seven tomato SlSR genes were cloned.

Gene
SlSRse0
Outcome
seven SR/CAMTAse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“we cloned seven SR/CAMTAs, designated as SlSRs, from tomato”

✓ located verbatim in the source · abstract, characters 540–599 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

All seven proteins contain DNA-binding and calmodulin-binding sites.

Gene
seven genese0
Outcome
conserved DNA-binding domain and a calmodulin-binding sitee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“All seven genes encode polypeptides with a conserved DNA-binding domain and a calmodulin-binding site”

✓ located verbatim in the source · abstract, characters 629–730 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Calmodulin binds the putative target site in a calcium-dependent manner.

Gene
Calmoduline0
Outcome
Calmodulin specifically binds to the putative targeting sitee0
Qualifier
calcium-dependent mannere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Calmodulin specifically binds to the putative targeting site in a calcium-dependent manner”

✓ located verbatim in the source · abstract, characters 732–822 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

SlSR genes are highly but differentially expressed during fruit development and ripening.

Organ / stage
fruit development and ripeninge0
Gene
SlSRse0
Outcome
SlSRs were highly yet differentially expressede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“All SlSRs were highly yet differentially expressed during fruit development and ripening”

✓ located verbatim in the source · abstract, characters 824–912 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

SlSR2 expression was scarcely detected at mature green and breaker stages.

Organ / stage
mature green and breaker stagese0
Gene
SlSR2e0
Outcome
expression of SlSR2 was scarcely detectede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the expression of SlSR2 was scarcely detected at the mature green and breaker stages”

✓ located verbatim in the source · abstract, characters 928–1012 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

SlSR3L and SlSR4 expression was exclusive to fruit tissues.

Organ / stage
fruit tissuese0
Gene
SlSR3L and SlSR4e0
Outcome
expressed exclusively in fruit tissuese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“SlSR3L and SlSR4 were expressed exclusively in fruit tissues”

✓ located verbatim in the source · abstract, characters 1073–1133 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The rin mutant dramatically altered expression of all seven SlSRs relative to wild type fruit.

Material
ripening mutant rine0
Outcome
expression profiles of all seven SlSRse0
Direction
dramatically alterede0
Comparator
wildtype fruite0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the expression profiles of all seven SlSRs were dramatically altered in ripening mutant rin compared with wildtype fruit”

✓ located verbatim in the source · abstract, characters 1199–1319 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The nor mutant showed only minor SlSR expression alterations.

Material
ripening mutant nore0
Outcome
minor alterationse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“only minor alterations were noted for ripening mutant nor and Nr fruit”

✓ located verbatim in the source · abstract, characters 1334–1404 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The Nr mutant showed only minor SlSR expression alterations.

Material
Nr fruite0
Outcome
minor alterationse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“only minor alterations were noted for ripening mutant nor and Nr fruit”

✓ located verbatim in the source · abstract, characters 1334–1404 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Ethylene transiently stimulated all SlSR expression in mature green fruit within one to two hours.

Organ / stage
mature green wildtype fruite0
Treatment
ethylene treatmente0
Outcome
expression of all SlSRse0
Direction
stimulatede0
Qualifier
within one to two hourse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“ethylene treatment of mature green wildtype fruit transiently stimulated expression of all SlSRs within one to two hours”

✓ located verbatim in the source · abstract, characters 1419–1539 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors suggest calcium/calmodulin/SlSR interactions regulate fruit development and ripening.

Outcome
fruit development and ripeninge0
Qualifier
calcium/calmodulin/SlSR interactionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“calcium signaling is involved in the regulation of fruit development and ripening through calcium/calmodulin/SlSR interactions”

✓ located verbatim in the source · abstract, characters 1706–1832 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 79–85 · show in text ↑

ethene · molecular: expression · Solanum lycopersicum (tomato)Positive and negative results

30 papers: 16 positive, 14 negative or no effect

15 papers in the same direction as this paper · 14 in the opposite direction

  1. positive
  2. no effect
  3. no effect

26 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.