Paper · 2014 · Philosophical Transactions of the Royal Society B Biological Sciences

Adaptive gains through repeated gene loss: parallel evolution of cyanogenesis polymorphisms in the genus Trifolium (Fabaceae)

Kenneth M. Olsen; Nicholas J. Kooyers; Linda L. Small

5
claims
10
verbatim quotes
17
citations
3
research areas
✓
Open access

Abstract

Variation in cyanogenesis (hydrogen cyanide release following tissue damage) was first noted in populations of white clover more than a century ago, and subsequent decades of research have established this system as a classic example of an adaptive chemical defence polymorphism. Here, we document polymorphisms for cyanogenic components in several relatives of white clover, and we determine the molecular basis of this trans-specific adaptive variation. One hundred and thirty-nine plants, representing 13 of the 14 species within Trifolium section Trifoliastrum, plus additional species across the genus, were assayed for cyanogenic components (cyanogenic glucosides and their hydrolysing enzyme, linamarase) and for the presence of underlying cyanogenesis genes (CYP79D15 and Li, respectively). One or both cyanogenic components were detected in seven species, all within section Trifoliastrum; polymorphisms for the presence/absence (PA) of components were detected in six species. In a pattern that parallels our previous findings for white clover, all observed biochemical polymorphisms correspond to gene PA polymorphisms at CYP79D15 and Li. Relationships of DNA sequence haplotypes at the cyanogenesis loci and flanking genomic regions suggest independent evolution of gene deletions within species. This study thus provides evidence for the parallel evolution of adaptive biochemical polymorphisms through recurrent gene deletions in multiple species.

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Claims 5

Observationobservedoriginal resultmeasured

Claim · model-written summary

Cyanogenic components were found in seven species of section Trifoliastrum.

Taxon
TrifoliumTrifoliumt0
Outcome
cyanogenic componentse0
Value
seven speciese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trifolium
Trifolium · Taxon · picture of the genus (one of its species)AnRo0002 · CC0 · Wikimedia Commons ↗

Verbatim

e0

“One or both cyanogenic components were detected in seven species, all within section Trifoliastrum”

✓ located verbatim in the source · abstract, characters 799–897 · show in text ↑
t0

“Trifolium”

✓ located verbatim in the source · title, characters 105–114 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Six species had presence/absence polymorphisms for cyanogenic components.

Taxon
TrifoliumTrifoliumt0
Outcome
polymorphisms for the presence/absence (PA) of componentse0
Value
six speciese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trifolium
Trifolium · Taxon · picture of the genus (one of its species)AnRo0002 · CC0 · Wikimedia Commons ↗

Verbatim

e0

“polymorphisms for the presence/absence (PA) of components were detected in six species.”

✓ located verbatim in the source · abstract, characters 899–986 · show in text ↑
t0

“Trifolium”

✓ located verbatim in the source · title, characters 105–114 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Biochemical polymorphisms corresponded to CYP79D15 and Li gene presence/absence polymorphisms.

Taxon
TrifoliumTrifoliumt0
Gene
CYP79D15 and Lie0
Outcome
biochemical polymorphismse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trifolium
Trifolium · Taxon · picture of the genus (one of its species)AnRo0002 · CC0 · Wikimedia Commons ↗

Verbatim

e0

“all observed biochemical polymorphisms correspond to gene PA polymorphisms at CYP79D15 and Li.”

✓ located verbatim in the source · abstract, characters 1055–1149 · show in text ↑
t0

“Trifolium”

✓ located verbatim in the source · title, characters 105–114 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Haplotype relationships suggest independent evolution of gene deletions within species.

Taxon
TrifoliumTrifoliumt0
Gene
cyanogenesis locie0
Outcome
independent evolution of gene deletions within speciese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trifolium
Trifolium · Taxon · picture of the genus (one of its species)AnRo0002 · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Relationships of DNA sequence haplotypes at the cyanogenesis loci and flanking genomic regions suggest independent evolution of gene deletions within species.”

✓ located verbatim in the source · abstract, characters 1150–1308 · show in text ↑
t0

“Trifolium”

✓ located verbatim in the source · title, characters 105–114 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Repeated gene deletions support parallel evolution of adaptive biochemical polymorphisms.

Taxon
TrifoliumTrifoliumt0
Outcome
parallel evolution of adaptive biochemical polymorphismse0
Qualifier
recurrent gene deletionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trifolium
Trifolium · Taxon · picture of the genus (one of its species)AnRo0002 · CC0 · Wikimedia Commons ↗

Verbatim

e0

“parallel evolution of adaptive biochemical polymorphisms through recurrent gene deletions in multiple species.”

✓ located verbatim in the source · abstract, characters 1351–1461 · show in text ↑
t0

“Trifolium”

✓ located verbatim in the source · title, characters 105–114 · show in text ↑