Paper · 2016 · Plant Biotechnology

A loss-of-function mutation in the DWARF4/PETANKO5 gene enhances the late-flowering and semi-dwarf phenotypes of the Arabidopsis clock mutant lhy-12;cca1-101 under continuous light without affecting FLC expression

Syunji Suzuki; Kana Miyata; Miyuki Hara; et al.

7
claims
14
verbatim quotes
3
citations
3
research areas
✓
Open access

Abstract

The circadian clock plays important roles in the control of photoperiodic flowering in Arabidopsis. Mutations in the LATE ELONGATED HYPOCOTYL (LHY) and CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) genes (lhy;cca1) accelerate flowering under short days, whereas lhy;cca1 delays flowering under continuous light (LL). The lhy;cca1 mutant also exhibits short hypocotyls and petioles under LL. However, the molecular mechanisms underlying the regulation of both flowering time and organ lengths in the LHY/CCA1-dependent pathway are not fully understood. To address these questions, we performed EMS mutagenesis of the lhy-12;cca1-101 line and screened for mutations that enhance the lhy;cca1 phenotypes under LL. In this screen, we identified a novel allele of dwarf4 (dwf4) and named it petanko 5 (pta5). A similar level of enhancement of the delay in flowering was observed in these two dwf4 mutants when combined with the lhy;cca1 mutations. The lhy;cca1 and dwf4 mutations did not significantly affect the expression level of the floral repressor gene FLC under LL. Our results suggest that a defect in brassinosteroid (BR) signaling delayed flowering independent of the FLC expression level, at least in plants with the lhy;cca1 mutation grown under LL. The dwf4/pta5 mutation did not enhance the late-flowering phenotype of plants overexpressing SVP under LL, suggesting that SVP and BR function in a common pathway that controls flowering time. Our results suggest that the lhy;cca1 mutant exhibits delayed flowering due to both the BR signaling-dependent and -independent pathways under LL.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

A novel dwarf4 allele, petanko 5, was found in the Arabidopsis mutant screen.

Taxon
ArabidopsisArabidopsise1
Gene
dwarf4 (dwf4)e0
Outcome
novel allelee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“we identified a novel allele of dwarf4 (dwf4) and named it petanko 5 (pta5)”

✓ located verbatim in the source · abstract, characters 717–792 · show in text ↑
e1

“flowering in Arabidopsis”

✓ located verbatim in the source · abstract, characters 74–98 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Two dwf4 mutants similarly enhanced flowering delay when combined with lhy;cca1 mutations.

Taxon
ArabidopsisArabidopsise1
Treatment
combined with the lhy;cca1 mutationse0
Gene
dwf4e0
Outcome
delay in floweringe0
Direction
enhancemente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“A similar level of enhancement of the delay in flowering was observed in these two dwf4 mutants when combined with the lhy;cca1 mutations.”

✓ located verbatim in the source · abstract, characters 794–932 · show in text ↑
e1

“flowering in Arabidopsis”

✓ located verbatim in the source · abstract, characters 74–98 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

The lhy;cca1 and dwf4 mutations did not significantly change FLC expression under continuous light.

Taxon
ArabidopsisArabidopsise1
Treatment
lhy;cca1 and dwf4 mutationse0
Gene
FLCe0
Outcome
expression level of the floral repressor gene FLCe0
Direction
did not significantly affecte0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The lhy;cca1 and dwf4 mutations did not significantly affect the expression level of the floral repressor gene FLC under LL.”

✓ located verbatim in the source · abstract, characters 933–1057 · show in text ↑
e1

“flowering in Arabidopsis”

✓ located verbatim in the source · abstract, characters 74–98 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

A brassinosteroid signaling defect may delay flowering independently of FLC expression in lhy;cca1 plants under continuous light.

Taxon
ArabidopsisArabidopsise1
Gene
FLCe0
Outcome
delayed floweringe0
Qualifier
defect in brassinosteroid (BR) signalinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“a defect in brassinosteroid (BR) signaling delayed flowering independent of the FLC expression level, at least in plants with the lhy;cca1 mutation grown under LL”

✓ located verbatim in the source · abstract, characters 1083–1245 · show in text ↑
e1

“flowering in Arabidopsis”

✓ located verbatim in the source · abstract, characters 74–98 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

The dwf4/pta5 mutation did not enhance late flowering of SVP overexpressors under continuous light.

Taxon
ArabidopsisArabidopsise1
Treatment
dwf4/pta5 mutatione0
Gene
SVPe0
Outcome
late-flowering phenotypee0
Direction
did not enhancee0
Comparator
plants overexpressing SVPe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The dwf4/pta5 mutation did not enhance the late-flowering phenotype of plants overexpressing SVP under LL”

✓ located verbatim in the source · abstract, characters 1247–1352 · show in text ↑
e1

“flowering in Arabidopsis”

✓ located verbatim in the source · abstract, characters 74–98 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

SVP and brassinosteroid may function in a shared flowering-time pathway.

Taxon
ArabidopsisArabidopsise1
Gene
SVPe0
Outcome
flowering timee0
Qualifier
common pathwaye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“SVP and BR function in a common pathway that controls flowering time”

✓ located verbatim in the source · abstract, characters 1370–1438 · show in text ↑
e1

“flowering in Arabidopsis”

✓ located verbatim in the source · abstract, characters 74–98 · show in text ↑
Mechanismauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

Both brassinosteroid-dependent and independent pathways may explain delayed flowering of lhy;cca1 under continuous light.

Taxon
ArabidopsisArabidopsise1
Outcome
delayed floweringe0
Qualifier
BR signaling-dependent and -independent pathwayse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the lhy;cca1 mutant exhibits delayed flowering due to both the BR signaling-dependent and -independent pathways under LL”

✓ located verbatim in the source · abstract, characters 1465–1585 · show in text ↑
e1

“flowering in Arabidopsis”

✓ located verbatim in the source · abstract, characters 74–98 · show in text ↑

loss of function · molecular: expression · ArabidopsisPositive and negative results

197 papers: 38 positive, 159 negative or no effect

158 papers in the same direction as this paper · 38 in the opposite direction

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  2. positive
  3. positive

193 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.