Paper · 2019 · Journal of Synchrotron Radiation

Minimizing experimental artefacts in synchrotron-based X-ray analyses of Fe speciation in tissues of rice plants

Peng Wang; Brigid A. McKenna; Neal W. Menzies; et al.

6
claims
10
verbatim quotes
7
citations
2
research areas
—
Not open access

Abstract

Iron (Fe) plays an important role within environmental systems. Synchrotron-based X-ray approaches, including X-ray absorption spectroscopy (XAS), provide powerful tools for in situ analyses of Fe speciation, but beam damage during analysis may alter Fe speciation during its measurement. XAS was used to examine whether experimental conditions affect the analysis of Fe speciation in plant tissues. Even when analyzed in a cryostat at 12 K, it was found that Fe III can rapidly (within 0.5–1 min) photoreduce to Fe II , although the magnitude of photoreduction varied depending upon the hydration of the sample, the coordination chemistry of the Fe, as well as other properties. For example, photoreduction of Fe III was considerably higher for aqueous standard compounds than for hydrated plant-root tissues. The use of freeze-dried samples in the cryostat (12 K) markedly reduced the magnitude of this Fe III photoreduction, and there was no evidence that the freeze-drying process itself resulted in experimental artefacts under the current experimental conditions, such as through the oxidation of Fe II , although some comparatively small differences were observed when comparing spectra of hydrated and freeze-dried Fe II compounds. The results of this study have demonstrated that Fe III photoreduction can occur during X-ray analysis, and provides suitable conditions to preserve Fe speciation to minimize the extent of beam damage when analyzing environmental samples. All studies utilizing XAS are encouraged to include a preliminary experiment to determine if beam damage is occurring, and, where appropriate, to take the necessary steps (such as freeze drying) to overcome these issues.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Even in a cryostat at 12 K, Fe III can photoreduce to Fe II within 0.5-1 min during X-ray absorption analysis.

Outcome
photoreduce to Fe IIe0
Value
within 0.5–1 mine0
Setting
cryostat at 12 Ke0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“tissues of rice plants”

✓ located verbatim in the source · title, characters 90–112 · show in text ↑
e0

“Even when analyzed in a cryostat at 12 K, it was found that Fe III can rapidly (within 0.5–1 min) photoreduce to Fe II”

✓ located verbatim in the source · abstract, characters 400–518 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Photoreduction of Fe III was considerably higher for aqueous standard compounds than for hydrated plant-root tissues.

Outcome
photoreduction of Fe IIIe0
Direction
highere0
Qualifier
aqueous standard compoundse0
Comparator
hydrated plant-root tissuese0

Verbatim

e0

“photoreduction of Fe III was considerably higher for aqueous standard compounds than for hydrated plant-root tissues”

✓ located verbatim in the source · abstract, characters 693–809 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Freeze-dried samples in the cryostat markedly reduced the magnitude of Fe III photoreduction.

Treatment
freeze-dried samples in the cryostat (12 K)e0
Outcome
magnitude of this Fe III photoreductione0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“tissues of rice plants”

✓ located verbatim in the source · title, characters 90–112 · show in text ↑
e0

“The use of freeze-dried samples in the cryostat (12 K) markedly reduced the magnitude of this Fe III photoreduction”

✓ located verbatim in the source · abstract, characters 811–926 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

There was no evidence that the freeze-drying process itself caused experimental artefacts under the conditions used.

Treatment
freeze-drying processe0
Outcome
experimental artefactse0
Direction
no evidencee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“tissues of rice plants”

✓ located verbatim in the source · title, characters 90–112 · show in text ↑
e0

“there was no evidence that the freeze-drying process itself resulted in experimental artefacts”

✓ located verbatim in the source · abstract, characters 932–1026 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Comparatively small differences were observed between spectra of hydrated and freeze-dried Fe II compounds.

Outcome
comparatively small differencese0
Qualifier
spectra of hydrated and freeze-dried Fe II compoundse0

Not reportedTaxon

Verbatim

e0

“some comparatively small differences were observed when comparing spectra of hydrated and freeze-dried Fe II compounds”

✓ located verbatim in the source · abstract, characters 1120–1238 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors recommend that all XAS studies include a preliminary experiment to determine whether beam damage is occurring.

Outcome
preliminary experiment to determine if beam damage is occurringe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“tissues of rice plants”

✓ located verbatim in the source · title, characters 90–112 · show in text ↑
e0

“All studies utilizing XAS are encouraged to include a preliminary experiment to determine if beam damage is occurring”

✓ located verbatim in the source · abstract, characters 1479–1596 · show in text ↑

cold · nutrient: content · Oryza sativa (rice)Positive and negative results

11 papers: 3 positive, 8 negative or no effect

2 papers in the same direction as this paper · 8 in the opposite direction

  1. negative
  2. negative
    Cold temperature significantly reduced rice N uptake.

    Effect of Low Temperature of Irrigation Water on Rice Growth and Nutrient Uptake · 1994 · compared with high temperature (24.5–27 °C soil and 26.5–29.0 °C)

    Opposite direction

  3. negative

7 papers more in this group

See all 11 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.