Paper · 2019 · Environmental Microbiology

Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen

S. Emilia Hannula; Hai‐kun Ma; Juan E. Pérez‐Jaramillo; et al.

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claims
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verbatim quotes
68
citations
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research areas
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Open access · cc-by

Abstract

Interactions between plants and soil microbes are important for plant growth and resistance. Through plant-soil-feedbacks, growth of a plant is influenced by the previous plant that was growing in the same soil. We performed a plant-soil feedback study with 37 grass, forb and legume species, to condition the soil and then tested the effects of plant-induced changes in soil microbiomes on the growth of the commercially important cut-flower Chrysanthemum in presence and absence of a pathogen. We analysed the fungal and bacterial communities in these soils using next-generation sequencing and examined their relationship with plant growth in inoculated soils with or without the root pathogen, Pythium ultimum. We show that a large part of the soil microbiome is plant species-specific while a smaller part is conserved at the plant family level. We further identified clusters of plant species creating plant growth promoting microbiomes that suppress concomitantly plant pathogens. Especially soil inocula with higher relative abundances of arbuscular mycorrhizal fungi caused positive effects on the Chrysanthemum growth when exposed to the pathogen. We conclude that plants differ greatly in how they influence the soil microbiome and that plant growth and protection against pathogens is associated with a complex soil microbial community.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 4

Observationobservedoriginal resultmeasured

Claim · model-written summary

A large part of the soil microbiome was specific to the plant species that conditioned the soil, while a smaller part was conserved at the plant family level.

Taxon
plant speciese0
Outcome
soil microbiomee0

Verbatim

t0

“Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen”

✓ located verbatim in the source · title, characters 0–128 · show in text ↑
e0

“We show that a large part of the soil microbiome is plant species-specific while a smaller part is conserved at the plant family level”

✓ located verbatim in the source · abstract, characters 715–849 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Clusters of plant species were identified that create plant growth promoting soil microbiomes which at the same time suppress plant pathogens.

Taxon
plant speciese0
Outcome
plant growth promoting microbiomes that suppress concomitantly plant pathogense0

Verbatim

e0

“We further identified clusters of plant species creating plant growth promoting microbiomes that suppress concomitantly plant pathogens”

✓ located verbatim in the source · abstract, characters 851–986 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Soil inocula with higher relative abundances of arbuscular mycorrhizal fungi had positive effects on Chrysanthemum growth when the plants were exposed to the pathogen.

Taxon
ChrysanthemumChrysanthemume0
Treatment
soil inocula with higher relative abundances of arbuscular mycorrhizal fungie0
Interactor
arbuscular mycorrhizal fungie0symbiont
Outcome
Chrysanthemum growthe0
Direction
positive effectse0
Qualifier
when exposed to the pathogene0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Chrysanthemum
Chrysanthemum · Taxon · picture from its Wikimedia Commons categoryLucia Condac · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Especially soil inocula with higher relative abundances of arbuscular mycorrhizal fungi caused positive effects on the Chrysanthemum growth when exposed to the pathogen”

✓ located verbatim in the source · abstract, characters 988–1156 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors conclude that plant growth and protection against pathogens is associated with a complex soil microbial community.

Taxon
plantsViridiplantaee0
Interactor
complex soil microbial communitye0other
Outcome
plant growth and protection against pathogense0

Not reportedDirection

Verbatim

e0

“We conclude that plants differ greatly in how they influence the soil microbiome and that plant growth and protection against pathogens is associated with a complex soil microbial community”

✓ located verbatim in the source · abstract, characters 1158–1347 · show in text ↑

inoculation · growth · ChrysanthemumPositive and negative results

16 papers: 15 positive, 1 negative or no effect

14 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
  3. positive

12 papers more in this group

See all 16 papers →

mycorrhiza · growth · ChrysanthemumResults agree

10 papers: 10 positive, 0 negative or no effect

9 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

6 papers more in this group

See all 10 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.