Paper · 2021 · Oil Crop Science

Transcriptome analysis reveals genes expression pattern of seed response to heat stress in Brassica napus L.

Guizhen Gao; Jihong Hu; Xiaojun Zhang; et al.

9
claims
18
verbatim quotes
23
citations
3
research areas
✓
Open access · cc-by-nc-nd

Abstract

Seeds might deteriorate, and lose the ability to germinate when stored under high temperature and high humidity. Brassica napus is one of the most important oil crops in China. However, B. napus seeds were generally stored through summer season with high ambient temperature, which lead to seed viability loss. In order to understand the mechanism of seed response to heat stress and improve seed heat tolerance, B. napus seeds were treated with high temperature (40 ​°C) and ultra-high temperature (60 ​°C) for 4 ​h. The germination of heat-stressed seeds were obviously slower, the germination index and vigor index decreased with temperature increase from 40 to 60 ​°C, and the 40 ​°C pretreatment could improve the seed tolerance to 60 ​°C heat stress. Transcriptomics results showed that 442 differentially expressed genes (DEGs) were identified in seeds after heat stress. Gene ontology and KEGG pathway enrichment analysis revealed that some of the genes were involved in posttranslational modification, protein turnover, chaperones and carbohydrate transport, metabolic pathways and secondary metabolites biosynthesis pathway. Among these DEGs, sHSP and transcription factors genes were involved in heat stress tolerance. Thirty-two overlapping genes under different high temperature stress (40 ​°C and 60 ​°C) were enriched in biological processes of response to oxidative stress and abiotic stimulus. The expression trends of 12 genes randomly selected from the RNA-seq data were almost consistent with the results of qRT-PCR. Our results revealed several potential candidate genes and pathways related to heat responsive by high temperature, which is beneficial for further improving the heat tolerance in B. napus seeds.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Heat-stressed seeds germinated more slowly.

Taxon
Brassica napusBrassica napust0
Treatment
heat-stressede0
Outcome
germinatione0
Direction
slowere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The germination of heat-stressed seeds were obviously slower”

✓ located verbatim in the source · abstract, characters 518–578 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Germination index decreased as temperature rose from 40 to 60 °C.

Taxon
Brassica napusBrassica napust0
Treatment
temperature increase from 40 to 60 ​°Ce0
Outcome
germination indexe0
Direction
decreasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the germination index and vigor index decreased with temperature increase from 40 to 60 ​°C”

✓ located verbatim in the source · abstract, characters 580–671 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Vigor index decreased as temperature rose from 40 to 60 °C.

Taxon
Brassica napusBrassica napust0
Treatment
temperature increase from 40 to 60 ​°Ce0
Outcome
vigor indexe0
Direction
decreasede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the germination index and vigor index decreased with temperature increase from 40 to 60 ​°C”

✓ located verbatim in the source · abstract, characters 580–671 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

A 40 °C pretreatment improved seed tolerance to 60 °C heat stress.

Taxon
Brassica napusBrassica napust0
Treatment
40 ​°C pretreatmente0
Outcome
seed tolerance to 60 ​°C heat stresse0
Direction
improvee0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the 40 ​°C pretreatment could improve the seed tolerance to 60 ​°C heat stress”

✓ located verbatim in the source · abstract, characters 677–755 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Heat stress yielded 442 differentially expressed seed genes.

Taxon
Brassica napusBrassica napust0
Organ / stage
seedse0
Treatment
heat stresse0
Outcome
differentially expressed genes (DEGs)e0
Value
442e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“442 differentially expressed genes (DEGs) were identified in seeds after heat stress”

✓ located verbatim in the source · abstract, characters 793–877 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Enrichment implicated posttranslational modification, protein turnover, chaperones, carbohydrate transport, metabolism and secondary metabolite biosynthesis.

Taxon
Brassica napusBrassica napust0
Gene
genese0
Outcome
posttranslational modification, protein turnover, chaperones and carbohydrate transport, metabolic pathways and secondary metabolites biosynthesis pathwaye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“some of the genes were involved in posttranslational modification, protein turnover, chaperones and carbohydrate transport, metabolic pathways and secondary metabolites biosynthesis pathway”

✓ located verbatim in the source · abstract, characters 944–1133 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

sHSP and transcription factor genes were implicated in heat stress tolerance.

Taxon
Brassica napusBrassica napust0
Gene
sHSP and transcription factors genese0
Outcome
heat stress tolerancee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“sHSP and transcription factors genes were involved in heat stress tolerance”

✓ located verbatim in the source · abstract, characters 1153–1228 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Thirty-two genes overlapping the two temperature stresses were enriched in oxidative stress and abiotic stimulus responses.

Taxon
Brassica napusBrassica napust0
Gene
overlapping genese0
Outcome
response to oxidative stress and abiotic stimuluse0
Value
Thirty-twoe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Thirty-two overlapping genes under different high temperature stress (40 ​°C and 60 ​°C) were enriched in biological processes of response to oxidative stress and abiotic stimulus”

✓ located verbatim in the source · abstract, characters 1230–1409 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

RNA-seq and qRT-PCR gave almost consistent expression trends for 12 selected genes.

Taxon
Brassica napusBrassica napust0
Outcome
expression trendse0
Value
12 genese0
Comparator
qRT-PCRe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Brassica napus
Brassica napus · TaxonDidier Descouens · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“The expression trends of 12 genes randomly selected from the RNA-seq data were almost consistent with the results of qRT-PCR”

✓ located verbatim in the source · abstract, characters 1411–1535 · show in text ↑
t0

“Brassica napus”

✓ located verbatim in the source · title, characters 91–105 · show in text ↑

heat · growth · Brassica napus (oilseed rape)Positive and negative results

15 papers: 7 positive, 8 negative or no effect

7 papers in the same direction as this paper · 7 in the opposite direction

  1. positive
  2. positive
  3. positive

11 papers more in this group

See all 15 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.