Paper · 2021 · Journal of Agricultural and Food Chemistry

Integrative Analyses of Metabolomes and Transcriptomes Provide Insights into Flavonoid Variation in Grape Berries

Suwen Lu; Jiayang Wang; Yaxian Zhuge; et al.

8
claims
16
verbatim quotes
52
citations
3
research areas
—
Not open access

Abstract

Flavonoids in grapes contribute the quality of the berry, but the flavonoid diversity and the regulatory networks underlying the variation require a further investigation. In this study, we integrated multi-omics data to systematically explore the global metabolic and transcriptional profiles in the skins and pulps of three grape cultivars. The results revealed large-scale differences involved in the flavonoid metabolic pathway. A total of 133 flavonoids, including flavone and flavone C-glycosides, were identified. Beyond the visible differences of anthocyanins, there was large variation in other sub-branched flavonoids, most of which were positively correlated with anthocyanins in grapes. The expressions of most flavonoid biosynthetic genes and the major regulators MYBA1 were strongly consistent with the changes in flavonoids. Integrative analysis identified two novel transcription factors (MYB24 and MADS5) and two ubiquitin proteins (RHA2) as promising regulatory candidates for flavonoid biosynthesis in grapes. Further verification in various grape accessions indicated that five major genes including flavonol 3′5′-hydroxylase (F3′5′H), UDP-glucose:flavonoid 3-O-glycosyl-transferase, anthocyanin O-methyltransferase, acyltransferase (3AT), and glutathione S-transferase (GST4) controlled flavonoid variation in grape berries. These findings provide valuable information for understanding the mechanism of flavonoid biosynthesis in grape berries and the further development of grape health products.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

A total of 133 flavonoids were identified in grape berries.

Taxon
grapet0
Outcome
flavonoidse2
Value
133e2

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e2

“A total of 133 flavonoids, including flavone and flavone C-glycosides, were identified”

✓ located verbatim in the source · abstract, characters 433–519 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Grape berries showed large-scale differences in the flavonoid metabolic pathway among cultivars.

Taxon
grapet0
Outcome
large-scale differences involved in the flavonoid metabolic pathwaye1

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e1

“The results revealed large-scale differences involved in the flavonoid metabolic pathway”

✓ located verbatim in the source · abstract, characters 343–431 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Other sub-branched flavonoids varied widely in grapes beyond the visible anthocyanin differences.

Taxon
grapet0
Outcome
large variation in other sub-branched flavonoidse3

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e3

“Beyond the visible differences of anthocyanins, there was large variation in other sub-branched flavonoids, most of which were positively correlated with anthocyanins in grapes”

✓ located verbatim in the source · abstract, characters 521–697 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Most sub-branched flavonoids were positively correlated with anthocyanins in grapes.

Taxon
grapet0
Compound
anthocyaninse3
Outcome
sub-branched flavonoidse3
Direction
positively correlatede3

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e3

“Beyond the visible differences of anthocyanins, there was large variation in other sub-branched flavonoids, most of which were positively correlated with anthocyanins in grapes”

✓ located verbatim in the source · abstract, characters 521–697 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Expression of most flavonoid biosynthetic genes and MYBA1 was strongly consistent with changes in flavonoids.

Taxon
grapet0
Gene
MYBA1e5
Outcome
expressions of most flavonoid biosynthetic genese5

Not reportedDirection

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e5

“The expressions of most flavonoid biosynthetic genes and the major regulators MYBA1 were strongly consistent with the changes in flavonoids”

✓ located verbatim in the source · abstract, characters 699–838 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

MYB24 and MADS5 are promising regulatory candidates for flavonoid biosynthesis in grapes.

Taxon
grapet0
Gene
MYB24 and MADS5e6
Outcome
promising regulatory candidates for flavonoid biosynthesise6

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e6

“Integrative analysis identified two novel transcription factors (MYB24 and MADS5) and two ubiquitin proteins (RHA2) as promising regulatory candidates for flavonoid biosynthesis in grapes”

✓ located verbatim in the source · abstract, characters 840–1027 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

RHA2 is a promising regulatory candidate for flavonoid biosynthesis in grapes.

Taxon
grapet0
Gene
RHA2e6
Outcome
promising regulatory candidates for flavonoid biosynthesise6

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e6

“Integrative analysis identified two novel transcription factors (MYB24 and MADS5) and two ubiquitin proteins (RHA2) as promising regulatory candidates for flavonoid biosynthesis in grapes”

✓ located verbatim in the source · abstract, characters 840–1027 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Five major genes controlled flavonoid variation in grape berries.

Taxon
grapet0
Gene
F3′5′He7
Outcome
flavonoid variation in grape berriese7

Verbatim

t0

“Flavonoid Variation in Grape Berries”

✓ located verbatim in the source · title, characters 77–113 · show in text ↑
e7

“five major genes including flavonol 3′5′-hydroxylase (F3′5′H), UDP-glucose:flavonoid 3-O-glycosyl-transferase, anthocyanin O-methyltransferase, acyltransferase (3AT), and glutathione S-transferase (GST4) controlled flavonoid variation in grape berries”

✓ located verbatim in the source · abstract, characters 1093–1344 · show in text ↑