Paper · 2023 · Science Advances

Solanoeclepin B, a hatching factor for potato cyst nematode

Kosuke Shimizu; Ryota Akiyama; Yuya Okamura; et al.

6
claims
9
verbatim quotes
17
citations
4
research areas
✓
Open access

Abstract

The potato cyst nematode (PCN) causes extensive crop losses worldwide. Because the hatching of PCN requires host-derived molecules known as hatching factors (HFs), regulating HF production in host plants may help to control this harmful pest. Solanoeclepin A (SEA), isolated from potato, is the most active HF for PCN; however, its biosynthesis is completely unknown. We discovered a HF called solanoeclepin B (SEB) from potato and tomato root exudates and showed that SEB was biosynthesized in the plant and converted to SEA outside the plant by biotic agents. Moreover, we identified five SEB biosynthetic genes encoding three 2-oxoglutarate-dependent dioxygenases and two cytochrome P450 monooxygenases in tomato. Exudates from tomato hairy roots in which each of the genes was disrupted contained no SEB and had low hatch-stimulating activity for PCN. These findings will help to breed crops with a lower risk of PCN infection.

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Claims 6

Observationobservedoriginal resultmeasured

Claim · model-written summary

Solanoeclepin B was discovered in potato and tomato root exudates as a hatching factor.

Organ / stage
root exudatese0
Interactor
PCNe1pest
Outcome
solanoeclepin B (SEB)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“We discovered a HF called solanoeclepin B (SEB) from potato and tomato root exudates”

✓ located verbatim in the source · abstract, characters 368–452 · show in text ↑
e1

“The potato cyst nematode (PCN) causes extensive crop losses worldwide.”

✓ located verbatim in the source · abstract, characters 0–70 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Solanoeclepin B was biosynthesized in the plant.

Outcome
SEB was biosynthesizede0
Qualifier
in the plante0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“SEB was biosynthesized in the plant”

✓ located verbatim in the source · abstract, characters 469–504 · show in text ↑
t0

“potato”

✓ located verbatim in the source · title, characters 39–45 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Biotic agents converted solanoeclepin B to solanoeclepin A outside the plant.

Outcome
converted to SEAe0
Qualifier
outside the plant by biotic agentse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“SEB was biosynthesized in the plant and converted to SEA outside the plant by biotic agents.”

✓ located verbatim in the source · abstract, characters 469–561 · show in text ↑
t0

“potato”

✓ located verbatim in the source · title, characters 39–45 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Five SEB biosynthetic genes were identified in tomato.

Gene
SEB biosynthetic genese0
Outcome
SEB biosynthetic genese0
Value
fivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“we identified five SEB biosynthetic genes encoding three 2-oxoglutarate-dependent dioxygenases and two cytochrome P450 monooxygenases in tomato.”

✓ located verbatim in the source · abstract, characters 572–716 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Disruption of each identified gene eliminated SEB from tomato hairy-root exudates.

Organ / stage
hairy rootse0
Treatment
each of the genes was disruptede0
Outcome
no SEBe0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Exudates from tomato hairy roots in which each of the genes was disrupted contained no SEB”

✓ located verbatim in the source · abstract, characters 717–807 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Disruption of each gene left tomato root exudates with low PCN hatch-stimulating activity.

Organ / stage
hairy rootse0
Treatment
each of the genes was disruptede0
Interactor
PCNe0pest
Outcome
hatch-stimulating activity for PCNe0
Direction
lowe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Exudates from tomato hairy roots in which each of the genes was disrupted contained no SEB and had low hatch-stimulating activity for PCN.”

✓ located verbatim in the source · abstract, characters 717–855 · show in text ↑

loss of function · pest · Solanum lycopersicum (tomato)Positive and negative results

17 papers: 7 positive, 10 negative or no effect

6 papers in the same direction as this paper · 10 in the opposite direction

  1. no effect
  2. negative
  3. negative

13 papers more in this group

See all 17 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.