Paper · 2023 · International Journal of Molecular Sciences

Global Phosphoproteomic Analysis Reveals the Defense and Response Mechanisms of Japonica Rice under Low Nitrogen Stress

Shupeng Xie; Hualong Liu; Tianze Ma; et al.

7
claims
14
verbatim quotes
7
citations
2
research areas
✓
Open access · cc-by

Abstract

Nitrogen-based nutrients are the main factors affecting rice growth and development. As the nitrogen (N) application rate increased, the nitrogen use efficiency (NUE) of rice decreased. Therefore, it is important to understand the molecular mechanism of rice plant morphological, physiological, and yield formation under low N conditions to improve NUE. In this study, changes in the rice morphological, physiological, and yield-related traits under low N (13.33 ppm) and control N (40.00 ppm) conditions were performed. These results show that, compared with control N conditions, photosynthesis and growth were inhibited and the carbon (C)/N and photosynthetic nitrogen use efficiency (PNUE) were enhanced under low N conditions. To understand the post-translational modification mechanism underlying the rice response to low N conditions, comparative phosphoproteomic analysis was performed, and differentially modified proteins (DMPs) were further characterized. Compared with control N conditions, a total of 258 DMPs were identified under low N conditions. The modification of proteins involved in chloroplast development, chlorophyll synthesis, photosynthesis, carbon metabolism, phytohormones, and morphology-related proteins were differentially altered, which was an important reason for changes in rice morphological, physiological, and yield-related traits. Additionally, inconsistent changes in level of transcription and protein modification, indicates that the study of phosphoproteomics under low N conditions is also important for us to better understand the adaptation mechanism of rice to low N stress. These results provide insights into global changes in the response of rice to low N stress and may facilitate the development of rice cultivars with high NUE by regulating the phosphorylation level of carbon metabolism and rice morphology-related proteins.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 7

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Low nitrogen inhibited rice photosynthesis.

Treatment
low N conditionse0
Outcome
photosynthesise0
Direction
inhibitede0
Comparator
control N conditionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“compared with control N conditions, photosynthesis and growth were inhibited and the carbon (C)/N and photosynthetic nitrogen use efficiency (PNUE) were enhanced under low N conditions”

✓ located verbatim in the source · abstract, characters 546–730 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 89–93 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Low nitrogen inhibited rice growth.

Treatment
low N conditionse0
Outcome
growthe0
Direction
inhibitede0
Comparator
control N conditionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“compared with control N conditions, photosynthesis and growth were inhibited and the carbon (C)/N and photosynthetic nitrogen use efficiency (PNUE) were enhanced under low N conditions”

✓ located verbatim in the source · abstract, characters 546–730 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 89–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low nitrogen enhanced rice carbon to nitrogen ratio.

Treatment
low N conditionse0
Outcome
carbon (C)/Ne0
Direction
enhancede0
Comparator
control N conditionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“compared with control N conditions, photosynthesis and growth were inhibited and the carbon (C)/N and photosynthetic nitrogen use efficiency (PNUE) were enhanced under low N conditions”

✓ located verbatim in the source · abstract, characters 546–730 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 89–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Low nitrogen enhanced rice photosynthetic nitrogen use efficiency.

Treatment
low N conditionse0
Outcome
photosynthetic nitrogen use efficiency (PNUE)e0
Direction
enhancede0
Comparator
control N conditionse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“compared with control N conditions, photosynthesis and growth were inhibited and the carbon (C)/N and photosynthetic nitrogen use efficiency (PNUE) were enhanced under low N conditions”

✓ located verbatim in the source · abstract, characters 546–730 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 89–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Low nitrogen yielded 258 differentially modified proteins.

Treatment
low N conditionse0
Outcome
DMPse0
Value
258e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“a total of 258 DMPs were identified under low N conditions”

✓ located verbatim in the source · abstract, characters 1003–1061 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 89–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Protein modifications related to chloroplast development, chlorophyll synthesis, photosynthesis, carbon metabolism, phytohormones and morphology were altered under low nitrogen.

Outcome
modification of proteinse0
Direction
differentially alterede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“The modification of proteins involved in chloroplast development, chlorophyll synthesis, photosynthesis, carbon metabolism, phytohormones, and morphology-related proteins were differentially altered”

✓ located verbatim in the source · abstract, characters 1063–1261 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 89–93 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Transcription and protein modification changed inconsistently under low nitrogen.

Outcome
level of transcription and protein modificatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“inconsistent changes in level of transcription and protein modification”

✓ located verbatim in the source · abstract, characters 1383–1454 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 89–93 · show in text ↑

nitrogen · physiology: photosynthesis · Oryza sativa (rice)Positive and negative results

97 papers: 81 positive, 16 negative or no effect

80 papers in the same direction as this paper · 13 in the opposite direction · 3 reporting no difference from an alternative

  1. negative
  2. negative
  3. negative

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nitrogen · molecular: metabolites · Oryza sativa (rice)Positive and negative results

121 papers: 86 positive, 35 negative or no effect

85 papers in the same direction as this paper · 34 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
  2. negative
  3. negative

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nitrogen · growth · Oryza sativa (rice)Positive and negative results

511 papers: 402 positive, 109 negative or no effect

108 papers in the same direction as this paper · 402 in the opposite direction

  1. positive
  2. positive
  3. positive

507 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.