Paper · 2023 · Plant Physiology and Biochemistry

Combined transcriptome and proteome analysis revealed the molecular regulation mechanisms of zinc homeostasis and antioxidant machinery in tobacco in response to different zinc supplies

Jianjun Lu; Rongrong Ye; Mengyu Qu; et al.

6
claims
6
verbatim quotes
22
citations
2
research areas
✓
Open access · cc-by-nc-nd

Abstract

Zinc (Zn) is an essential micronutrient for plants. Adequate regulation of Zn uptake, transport and distribution, and adaptation to Zn-deficiency stress or Zn-excess toxicity are crucial for plant growth and development. However, little has been done to understand the molecular responses of plants toward different Zn supply levels. In the present study, we investigated the growth and physiological responses of tobacco seedlings grown under Zn-completely deficient, Zn-limiting, Zn-normal, and Zn-4-fold sufficient conditions, respectively, and demonstrated that Zn deficiency/limitation caused oxidative stress and impaired growth of tobacco plants. Combined transcriptome and proteome analysis revealed up-regulation of genes/proteins associated with Zn uptake and distribution, including ZIPs, NAS3s, and HMA1s, and up-regulation of genes/proteins involved in regulation of oxidative stress, including SODs, APX1s, GPX6, and GSTs in tobacco seedlings in response to Zn deficiency/limitation, suggesting that tobacco possessed mechanisms to regulate Zn homeostasis primarily through up-regulation of the ZIPs-NAS3s module, and to alleviate Zn deficiency/limitation-induced oxidative stress through activation of the antioxidant machinery. Our results provide novel insights into the adaptive mechanisms of tobacco in response to different Zn supplies, and would lay a theoretical foundation for development of varieties of tobacco or its relatives with high tolerance to Zn-deficiency.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zinc deficiency or limitation caused oxidative stress in tobacco plants.

Taxon
tobacco plantsNicotiana tabacume2
Treatment
Zn deficiency/limitatione2
Outcome
oxidative stresse2
Direction
causede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e2

“Zn deficiency/limitation caused oxidative stress and impaired growth of tobacco plants”

✓ located verbatim in the source · abstract, characters 566–652 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Zinc deficiency or limitation impaired growth of tobacco plants.

Taxon
tobacco plantsNicotiana tabacume2
Treatment
Zn deficiency/limitatione2
Outcome
growthe2
Direction
impairede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e2

“Zn deficiency/limitation caused oxidative stress and impaired growth of tobacco plants”

✓ located verbatim in the source · abstract, characters 566–652 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Zinc deficiency or limitation up-regulated genes and proteins for zinc uptake and distribution (ZIPs, NAS3s, HMA1s) in tobacco seedlings.

Taxon
tobacco seedlingsNicotiana tabacume3
Treatment
Zn deficiency/limitatione3
Gene
ZIPs, NAS3s, and HMA1se3
Outcome
genes/proteins associated with Zn uptake and distributione3
Direction
up-regulatione3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e3

“Combined transcriptome and proteome analysis revealed up-regulation of genes/proteins associated with Zn uptake and distribution, including ZIPs, NAS3s, and HMA1s, and up-regulation of genes/proteins involved in regulation of oxidative stress, including SODs, APX1s, GPX6, and GSTs in tobacco seedlings in response to Zn deficiency/limitation”

✓ located verbatim in the source · abstract, characters 654–996 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Zinc deficiency or limitation up-regulated genes and proteins for oxidative stress regulation (SODs, APX1s, GPX6, GSTs) in tobacco seedlings.

Taxon
tobacco seedlingsNicotiana tabacume3
Treatment
Zn deficiency/limitatione3
Gene
SODs, APX1s, GPX6, and GSTse3
Outcome
genes/proteins involved in regulation of oxidative stresse3
Direction
up-regulatione3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e3

“Combined transcriptome and proteome analysis revealed up-regulation of genes/proteins associated with Zn uptake and distribution, including ZIPs, NAS3s, and HMA1s, and up-regulation of genes/proteins involved in regulation of oxidative stress, including SODs, APX1s, GPX6, and GSTs in tobacco seedlings in response to Zn deficiency/limitation”

✓ located verbatim in the source · abstract, characters 654–996 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Tobacco appears to regulate zinc homeostasis primarily through up-regulation of the ZIPs-NAS3s module.

Gene
ZIPs-NAS3se4
Outcome
regulate Zn homeostasise4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e4

“suggesting that tobacco possessed mechanisms to regulate Zn homeostasis primarily through up-regulation of the ZIPs-NAS3s module, and to alleviate Zn deficiency/limitation-induced oxidative stress through activation of the antioxidant machinery”

✓ located verbatim in the source · abstract, characters 998–1242 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Tobacco appears to alleviate zinc deficiency-induced oxidative stress through activation of the antioxidant machinery.

Outcome
Zn deficiency/limitation-induced oxidative stresse4
Qualifier
through activation of the antioxidant machinerye4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e4

“suggesting that tobacco possessed mechanisms to regulate Zn homeostasis primarily through up-regulation of the ZIPs-NAS3s module, and to alleviate Zn deficiency/limitation-induced oxidative stress through activation of the antioxidant machinery”

✓ located verbatim in the source · abstract, characters 998–1242 · show in text ↑

zinc atom · physiology: oxidative · Nicotiana tabacum (tobacco)Positive and negative results

4 papers: 2 positive, 2 negative or no effect

1 paper in the same direction as this paper · 2 in the opposite direction

This paper is about lacking the nutrient, so it counts the other way round here.

  1. negative
  2. no effect
  3. positive
See all 4 papers →

zinc atom · growth · Nicotiana tabacum (tobacco)Positive and negative results

10 papers: 9 positive, 1 negative or no effect

8 papers in the same direction as this paper · 1 in the opposite direction

This paper is about lacking the nutrient, so it counts the other way round here.

  1. negative
  2. positive
  3. positive

6 papers more in this group

See all 10 papers →

zinc atom · molecular: expression · Nicotiana tabacum (tobacco)Results agree

4 papers: 0 positive, 4 negative or no effect

3 papers in the same direction as this paper

This paper is about lacking the nutrient, so it counts the other way round here.

  1. no effect
  2. no effect
  3. negative
See all 4 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.