Paper · 2023 · Frontiers in Plant Science

Raffinose degradation-related gene GhAGAL3 was screened out responding to salinity stress through expression patterns of GhAGALs family genes

Wenhua Chen; Yupeng Cui; Yunxin He; et al.

4
claims
6
verbatim quotes
4
citations
2
research areas
✓
Open access · cc-by

Abstract

A-galactosidases (AGALs), the oligosaccharide (RFO) catabolic genes of the raffinose family, play crucial roles in plant growth and development and in adversity stress. They can break down the non-reducing terminal galactose residues of glycolipids and sugar chains. In this study, the whole genome of AGALs was analyzed. Bioinformatics analysis was conducted to analyze members of the AGAL family in Gossypium hirsutum , Gossypium arboreum , Gossypium barbadense , and Gossypium raimondii. Meanwhile, RT-qPCR was carried out to analyze the expression patterns of AGAL family members in different tissues of terrestrial cotton. It was found that a series of environmental factors stimulated the expression of the GhAGAL3 gene. The function of GhAGAL3 was verified through virus-induced gene silencing (VIGS). As a result, GhAGAL3 gene silencing resulted in milder wilting of seedlings than the controls, and a significant increase in the raffinose content in cotton, indicating that GhAGAL3 responded to NaCl stress. The increase in raffinose content improved the tolerance of cotton. Findings in this study lay an important foundation for further research on the role of the GhAGAL3 gene family in the molecular mechanism of abiotic stress resistance in cotton.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 4

Associationobservedoriginal resultmeasured

Claim · model-written summary

Environmental factors stimulated GhAGAL3 expression.

Treatment
a series of environmental factorse0
Gene
GhAGAL3e0
Outcome
expression of the GhAGAL3 genee0
Direction
stimulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“a series of environmental factors stimulated the expression of the GhAGAL3 gene”

✓ located verbatim in the source · abstract, characters 646–725 · show in text ↑
t0

“terrestrial cotton”

✓ located verbatim in the source · abstract, characters 608–626 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

GhAGAL3 silencing caused milder seedling wilting than controls.

Treatment
GhAGAL3 gene silencinge0
Gene
GhAGAL3e0
Outcome
wilting of seedlingse0
Direction
mildere0
Comparator
the controlse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“GhAGAL3 gene silencing resulted in milder wilting of seedlings than the controls”

✓ located verbatim in the source · abstract, characters 822–902 · show in text ↑
t0

“terrestrial cotton”

✓ located verbatim in the source · abstract, characters 608–626 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

GhAGAL3 silencing significantly increased cotton raffinose content.

Treatment
GhAGAL3 gene silencinge0
Gene
GhAGAL3e0
Outcome
raffinose contente0
Direction
increasee0
Comparator
the controlse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“GhAGAL3 gene silencing resulted in milder wilting of seedlings than the controls, and a significant increase in the raffinose content in cotton”

✓ located verbatim in the source · abstract, characters 822–965 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors attribute improved cotton tolerance to increased raffinose content.

Compound
raffinosee0
Outcome
tolerance of cottone0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The increase in raffinose content improved the tolerance of cotton”

✓ located verbatim in the source · abstract, characters 1017–1083 · show in text ↑

loss of function · molecular: metabolites · Gossypium hirsutum (cotton)Positive and negative results

40 papers: 8 positive, 32 negative or no effect

7 papers in the same direction as this paper · 32 in the opposite direction

  1. negative
  2. negative
  3. negative

36 papers more in this group

See all 40 papers →

loss of function · disease · Gossypium hirsutum (cotton)Positive and negative results

84 papers: 24 positive, 60 negative or no effect

23 papers in the same direction as this paper · 60 in the opposite direction

  1. negative
  2. negative
  3. positive

80 papers more in this group

See all 84 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.