Paper · 2024 · New Phytologist

Combined GWAS and eGWAS reveals the genetic basis underlying drought tolerance in emmer wheat ( Triticum turgidum L.)

Guang Yang; Yan Pan; Wenqiu Pan; et al.

5
claims
7
verbatim quotes
30
citations
4
research areas
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Open access

Abstract

Drought is one of the major environmental constraints for wheat production world-wide. As the progenitor and genetic reservoir of common wheat, emmer wheat is considered as an invaluable gene pool for breeding drought-tolerant wheat. Combining GWAS and eGWAS analysis of 107 accessions, we identified 86 QTLs, 105 462 eQTLs as well as 68 eQTL hotspots associating with drought tolerance (DT) in emmer wheat. A complex regulatory network composed of 185 upstream regulator and 2432 downstream drought-responsive candidates was developed, of which TtOTS1 was found to play a negative effect in determining DT through affecting root development. This study sheds light on revealing the genetic basis underlying DT, which will provide the indispensable genes and germplasm resources for elite drought tolerance wheat improvement and breeding.

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Claims 5

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

GWAS and eGWAS identified 86 QTLs associated with drought tolerance.

Taxon
emmer wheate0
Outcome
QTLse0
Value
86 QTLse0

Verbatim

e0

“we identified 86 QTLs, 105 462 eQTLs as well as 68 eQTL hotspots associating with drought tolerance (DT) in emmer wheat”

✓ located verbatim in the source · abstract, characters 287–406 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

GWAS and eGWAS identified 105 462 eQTLs associated with drought tolerance.

Taxon
emmer wheate0
Outcome
eQTLse0
Value
105 462 eQTLse0

Verbatim

e0

“we identified 86 QTLs, 105 462 eQTLs as well as 68 eQTL hotspots associating with drought tolerance (DT) in emmer wheat”

✓ located verbatim in the source · abstract, characters 287–406 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

GWAS and eGWAS identified 68 eQTL hotspots associated with drought tolerance.

Taxon
emmer wheate0
Outcome
eQTL hotspotse0
Value
68 eQTL hotspotse0

Verbatim

e0

“we identified 86 QTLs, 105 462 eQTLs as well as 68 eQTL hotspots associating with drought tolerance (DT) in emmer wheat”

✓ located verbatim in the source · abstract, characters 287–406 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

A drought regulatory network comprised 185 upstream regulators and 2432 downstream drought-responsive candidates.

Taxon
emmer wheatt0
Outcome
complex regulatory networke0
Value
185 upstream regulator and 2432 downstream drought-responsive candidatese0

Verbatim

e0

“A complex regulatory network composed of 185 upstream regulator and 2432 downstream drought-responsive candidates was developed”

✓ located verbatim in the source · abstract, characters 408–535 · show in text ↑
t0

“emmer wheat”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑
Mechanismobservedoriginal resultnegativemeasured

Claim · model-written summary

TtOTS1 negatively affected drought tolerance through root development.

Taxon
emmer wheatt0
Gene
TtOTS1e0
Outcome
DTe0
Direction
negative effecte0
Qualifier
through affecting root developmente0

Verbatim

e0

“TtOTS1 was found to play a negative effect in determining DT through affecting root development”

✓ located verbatim in the source · abstract, characters 546–641 · show in text ↑
t0

“emmer wheat”

✓ located verbatim in the source · title, characters 82–93 · show in text ↑