Paper · 2024 · Plant Stress

Unveiling UVB resilience in Oryza sativa L.: Integrative analysis of physiological, molecular and microRNA responses

Vaishnavi Ashokkumar; Krishnaraj Thirugnanasambantham; Senthilkumar Palanisamy

10
claims
22
verbatim quotes
4
citations
3
research areas
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Open access · cc-by-nc-nd

Abstract

Rice is the staple food for more than half of the global population. It is cultivated in over 100 countries, and is predominant in Asia, which accounts for 90% of the world's production. As the most crucial food crop globally, rice is sensitive to both UVB radiation and climate variations. UltraViolet-B radiation (UVB) is recognised as adverse factors for photosynthesis and plant growth. The current study investigates the resilience of Oryza sativa L. (IR20) seedlings to UVB irradiation, focusing on parameters such as photosynthetic pigment, total sugar, phenolic, total free amino acids, malondialdehyde content, hydrogen peroxide, and antioxidative enzymes. The mRNA expression levels of genes involved in UVB perception, signalling, and response (UVR8, HY5, RLCK, PHT2, and URP) were studied using quantitative RT-PCR (RT-qPCR). Additionally, a computational approach was employed to identify UVB-responsive microRNAs (miRNAs) and their corresponding target mRNAs; which were subsequently validated using stem-loop RT-qPCR and RT-qPCR, respectively. Surprisingly, it was discovered that the H2O2 content in the IR20 cultivar increased in response to UVB irradiation, despite no significant changes observed in lipid peroxidation, chlorophyll, and phenolic content. Additionally, UVB irradiation increases the total sugar content and decreases the entire free amino acid content, while not affecting total protein. The RT-qPCR analysis of mRNA expression reveals that UVB exposure augment the expression of genes related to UVB signal detection (UVR8), signalling (HY5, RLCK, and WRKY), and response (PHT2, CA, and URP). Our findings also suggest that at the post-transcriptional stage, miRNAs expressed upon UVB irradiation are responsible for the significant tolerance of IR20 seedlings to UVB radiation. Overall, the results reveal that IR20 exhibits promise candidate for the development of rice varieties that are both highly productive and resilient to UVB induced stress.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

UVB increased H2O2 content in IR20.

Taxon
Oryza sativa L.Oryza sativat0
Material
IR20e0
Treatment
UVB irradiatione0
Outcome
H2O2 contente0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“H2O2 content in the IR20 cultivar increased in response to UVB irradiation”

✓ located verbatim in the source · abstract, characters 1100–1174 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

UVB caused no significant change in lipid peroxidation, chlorophyll or phenolic content.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
UVB irradiatione1
Outcome
lipid peroxidation, chlorophyll, and phenolic contente0
Direction
no significant changese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“no significant changes observed in lipid peroxidation, chlorophyll, and phenolic content”

✓ located verbatim in the source · abstract, characters 1184–1272 · show in text ↑
e1

“in response to UVB irradiation”

✓ located verbatim in the source · abstract, characters 1144–1174 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UVB increased total sugar content.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
UVB irradiatione0
Outcome
total sugar contente0
Direction
increasese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“UVB irradiation increases the total sugar content”

✓ located verbatim in the source · abstract, characters 1288–1337 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UVB decreased total free amino acid content.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
UVB irradiatione0
Outcome
entire free amino acid contente0
Direction
decreasese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“UVB irradiation increases the total sugar content and decreases the entire free amino acid content”

✓ located verbatim in the source · abstract, characters 1288–1386 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

UVB did not affect total protein.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
UVB irradiatione1
Outcome
total proteine0
Direction
not affectinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“while not affecting total protein”

✓ located verbatim in the source · abstract, characters 1388–1421 · show in text ↑
e1

“UVB irradiation increases the total sugar content”

✓ located verbatim in the source · abstract, characters 1288–1337 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UVB exposure increased UVR8 expression.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
UVB exposuree0
Gene
UVR8e0
Outcome
expression of genes related to UVB signal detectione0
Direction
augmente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“UVB exposure augment the expression of genes related to UVB signal detection (UVR8)”

✓ located verbatim in the source · abstract, characters 1476–1559 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UVB exposure increased expression of HY5, RLCK and WRKY signaling genes.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
UVB exposuree0
Gene
HY5, RLCK, and WRKYe0
Outcome
expression of genese0
Direction
augmente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“UVB exposure augment the expression of genes related to UVB signal detection (UVR8), signalling (HY5, RLCK, and WRKY)”

✓ located verbatim in the source · abstract, characters 1476–1593 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

UVB exposure increased expression of PHT2, CA and URP response genes.

Taxon
Oryza sativa L.Oryza sativat0
Treatment
UVB exposuree0
Gene
PHT2, CA, and URPe0
Outcome
expression of genese0
Direction
augmente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“UVB exposure augment the expression of genes related to UVB signal detection (UVR8), signalling (HY5, RLCK, and WRKY), and response (PHT2, CA, and URP)”

✓ located verbatim in the source · abstract, characters 1476–1627 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors suggest that UVB-expressed miRNAs contribute to significant UVB tolerance in IR20 seedlings.

Taxon
Oryza sativa L.Oryza sativat0
Material
IR20e0
Gene
miRNAse0
Outcome
significant tolerance of IR20 seedlings to UVB radiatione0
Qualifier
expressed upon UVB irradiatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“miRNAs expressed upon UVB irradiation are responsible for the significant tolerance of IR20 seedlings to UVB radiation”

✓ located verbatim in the source · abstract, characters 1695–1813 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors identify IR20 as a promising candidate for productive, UVB-resilient rice varieties.

Taxon
Oryza sativa L.Oryza sativat0
Material
IR20e0
Outcome
candidate for the development of rice varieties that are both highly productive and resilient to UVB induced stresse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Oryza sativa L.”

✓ located verbatim in the source · title, characters 28–43 · show in text ↑
e0

“IR20 exhibits promise candidate for the development of rice varieties that are both highly productive and resilient to UVB induced stress”

✓ located verbatim in the source · abstract, characters 1848–1985 · show in text ↑

radiation · physiology: pigments · Oryza sativa (rice)Results differ

11 papers: 3 positive, 8 negative or no effect

7 papers in the same direction as this paper · 3 in the opposite direction

  1. positive
  2. positive
  3. positive

7 papers more in this group

See all 11 papers →

uv · physiology: pigments · Oryza sativa (rice)Results differ

11 papers: 0 positive, 11 negative or no effect

10 papers in the same direction as this paper

  1. negative
  2. negative
  3. negative

7 papers more in this group

See all 11 papers →

uv · quality: protein · Oryza sativa (rice)Positive and negative results

3 papers: 1 positive, 2 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. negative
See all 3 papers →

uv · physiology: oxidative · Oryza sativa (rice)Positive and negative results

12 papers: 2 positive, 10 negative or no effect

9 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. positive
  3. positive

8 papers more in this group

See all 12 papers →

radiation · physiology: oxidative · Oryza sativa (rice)Results agree

3 papers: 0 positive, 3 negative or no effect

2 papers in the same direction as this paper

  1. negative
  2. negative
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.