Paper · 2024 · Scientific Reports

Multifaceted natural drought response mechanisms in three elite date palm cultivars uncovered by expressed sequence tags analysis

Zafar Iqbal; Muhammad Munir

12
claims
25
verbatim quotes
8
citations
4
research areas
✓
Open access · cc-by-nc-nd

Abstract

This study extends our prior research on drought responses in three date palm cultivars (Khalas, Reziz, and Sheshi) under controlled conditions. Here, we investigated their drought stress adaptive strategies under ambient environment. Under natural field drought conditions, three date palm cultivars experienced significantly ( p ≤ 0.05) varying regulations in their physiological attributes. Specifically, chlorophyll content, leaf RWC, photosynthesis, stomatal conductance, and transpiration reduced significantly, while intercellular CO 2 concentration and water use efficiency increased. Through suppression subtraction hybridization (SSH), a rich repertoire (1026) of drought-responsive expressed sequence tags (ESTs) were identified: 300 in Khalas, 343 in Reziz, and 383 in Sheshi. Functional analysis of ESTs, including gene annotation and KEGG pathways elucidation, unveiled that these cultivars withstand drought by leveraging indigenous and multifaceted pathways. While some pathways aligned with previously reported drought resilience mechanism observed under controlled conditions, several new indigenous pathways were noted, pinpointing cultivar-specific adaptations. ESTs identified in three date palm cultivars were enriched through GSEA analysis. Khalas exhibited enrichment in cellular and metabolic processes, catalytic activity, and metal ion binding. Reziz showed enrichment in biological regulation, metabolic processes, signaling, and nuclear functions. Conversely, Sheshi displayed enrichment in organelle, photosynthetic, and ribosomal components. Notably, ca. 50% of the ESTs were unique and novel, underlining the complexity of their adaptive genetic toolkit. Overall, Khalas displayed superior drought tolerance, followed by Reziz and Sheshi, highlighting cultivar-specific variability in adaptation. Conclusively, date palm cultivars exhibited diverse genetic and physiological strategies to cope with drought, demonstrating greater complexity in their resilience compared to controlled settings.

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Claims 12

Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Chlorophyll content, leaf RWC and photosynthesis significantly declined under field drought.

Taxon
date palmPhoenix dactyliferat0
Treatment
natural field drought conditionse0
Outcome
chlorophyll content, leaf RWC, photosynthesise0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Under natural field drought conditions, three date palm cultivars experienced significantly ( p ≤ 0.05) varying regulations in their physiological attributes. Specifically, chlorophyll content, leaf RWC, photosynthesis, stomatal conductance, and transpiration reduced significantly”

✓ located verbatim in the source · abstract, characters 235–516 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Stomatal conductance and transpiration significantly declined under field drought.

Taxon
date palmPhoenix dactyliferat0
Treatment
natural field drought conditionse0
Outcome
stomatal conductance, and transpiratione0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Under natural field drought conditions, three date palm cultivars experienced significantly ( p ≤ 0.05) varying regulations in their physiological attributes. Specifically, chlorophyll content, leaf RWC, photosynthesis, stomatal conductance, and transpiration reduced significantly”

✓ located verbatim in the source · abstract, characters 235–516 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Intercellular CO 2 concentration and water use efficiency increased under field drought.

Taxon
date palmPhoenix dactyliferat0
Treatment
natural field drought conditionse0
Outcome
intercellular CO 2 concentration and water use efficiencye0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Under natural field drought conditions, three date palm cultivars experienced significantly ( p ≤ 0.05) varying regulations in their physiological attributes. Specifically, chlorophyll content, leaf RWC, photosynthesis, stomatal conductance, and transpiration reduced significantly, while intercellular CO 2 concentration and water use efficiency increased.”

✓ located verbatim in the source · abstract, characters 235–592 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Suppression subtraction hybridization identified 300 drought-responsive ESTs in Khalas.

Taxon
date palmPhoenix dactyliferat0
Material
Khalase0
Outcome
drought-responsive expressed sequence tags (ESTs)e0
Value
300e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“1026) of drought-responsive expressed sequence tags (ESTs) were identified: 300 in Khalas, 343 in Reziz, and 383 in Sheshi.”

✓ located verbatim in the source · abstract, characters 665–788 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Suppression subtraction hybridization identified 343 drought-responsive ESTs in Reziz.

Taxon
date palmPhoenix dactyliferat0
Material
Rezize0
Outcome
drought-responsive expressed sequence tags (ESTs)e0
Value
343e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“drought-responsive expressed sequence tags (ESTs) were identified: 300 in Khalas, 343 in Reziz, and 383 in Sheshi.”

✓ located verbatim in the source · abstract, characters 674–788 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Suppression subtraction hybridization identified 383 drought-responsive ESTs in Sheshi.

Taxon
date palmPhoenix dactyliferat0
Material
Sheshie0
Outcome
drought-responsive expressed sequence tags (ESTs)e0
Value
383e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“drought-responsive expressed sequence tags (ESTs) were identified: 300 in Khalas, 343 in Reziz, and 383 in Sheshi.”

✓ located verbatim in the source · abstract, characters 674–788 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Functional analysis identified indigenous and cultivar-specific drought-adaptation pathways.

Taxon
date palmPhoenix dactyliferat0
Outcome
indigenous and multifaceted pathwayse0
Qualifier
cultivar-specific adaptationse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“these cultivars withstand drought by leveraging indigenous and multifaceted pathways.”

✓ located verbatim in the source · abstract, characters 889–974 · show in text ↑
e1

“several new indigenous pathways were noted, pinpointing cultivar-specific adaptations.”

✓ located verbatim in the source · abstract, characters 1095–1181 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Khalas ESTs were enriched in cellular and metabolic processes, catalytic activity and metal ion binding.

Taxon
date palmPhoenix dactyliferat0
Material
Khalase0
Outcome
cellular and metabolic processes, catalytic activity, and metal ion bindinge0
Direction
enrichmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Khalas exhibited enrichment in cellular and metabolic processes, catalytic activity, and metal ion binding.”

✓ located verbatim in the source · abstract, characters 1264–1371 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Reziz ESTs were enriched in biological regulation, metabolic processes, signaling and nuclear functions.

Taxon
date palmPhoenix dactyliferat0
Material
Rezize0
Outcome
biological regulation, metabolic processes, signaling, and nuclear functionse0
Direction
enrichmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Reziz showed enrichment in biological regulation, metabolic processes, signaling, and nuclear functions.”

✓ located verbatim in the source · abstract, characters 1372–1476 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Sheshi ESTs were enriched in organelle, photosynthetic and ribosomal components.

Taxon
date palmPhoenix dactyliferat0
Material
Sheshie0
Outcome
organelle, photosynthetic, and ribosomal componentse0
Direction
enrichmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Sheshi displayed enrichment in organelle, photosynthetic, and ribosomal components.”

✓ located verbatim in the source · abstract, characters 1489–1572 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

About 50% of identified ESTs were unique and novel.

Taxon
date palmPhoenix dactyliferat0
Outcome
ESTs were unique and novele0
Value
ca. 50%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“ca. 50% of the ESTs were unique and novel”

✓ located verbatim in the source · abstract, characters 1582–1623 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Khalas showed greater drought tolerance than Reziz and Sheshi.

Taxon
date palmPhoenix dactyliferat0
Material
Khalase0
Outcome
drought tolerancee0
Direction
superiore0
Comparator
Reziz and Sheshie0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phoenix dactylifera
Phoenix dactylifera · TaxonEJ Burns · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Khalas displayed superior drought tolerance, followed by Reziz and Sheshi”

✓ located verbatim in the source · abstract, characters 1696–1769 · show in text ↑
t0

“date palm”

✓ located verbatim in the source · title, characters 64–73 · show in text ↑

drought · physiology: gas exchange · Phoenix dactylifera (date palm)Positive and negative results

3 papers: 2 positive, 1 negative or no effect

1 paper in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
See all 3 papers →

drought · physiology: photosynthesis · Phoenix dactylifera (date palm)Results agree

3 papers: 0 positive, 3 negative or no effect

2 papers in the same direction as this paper

  1. negative
  2. negative
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.