Paper · 2025 · mBio

PmeR, a TetR-like transcriptional regulator, is involved in both auxin signaling and virulence in the plant pathogen Pseudomonas syringae strain Pto DC3000

Chia-Yun Lee; Maya Irvine; Barbara Kunkel

7
claims
23
verbatim quotes
2
citations
2
research areas
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Open access · cc-by

Abstract

ABSTRACT Plant pathogenic bacteria, such as Pseudomonas syringae strain Pto DC3000, respond to host signals through complex signaling networks that regulate bacterial growth and virulence. The plant hormone indole-3-acetic acid (IAA), also known as auxin, promotes bacterial pathogenesis via multiple mechanisms, including through reprogramming of bacterial transcription. However, the mechanisms that Pto DC3000 uses to sense and respond to auxin are not well understood. Here, we identify a novel bacterial auxin-signaling mechanism mediated by pmeR , which encodes a TetR-like family transcriptional repressor that acts as an important regulator of IAA-responsive gene expression in Pto DC3000. Using qRT-PCR and transcriptional reporter assays, we show that pmeR is induced by IAA and regulates several auxin-responsive genes. pmeR plays two different roles in the regulation of auxin-responsive genes: as a repressor of its own expression and as an activator of other genes. Plant infection assays further show that the disruption of pmeR results in reduced bacterial growth in Arabidopsis thaliana . Notably, although PmeR de-represses the transcription of pmeR upon IAA treatment, it does not appear to directly bind IAA. Rather, our biochemical results indicate that the auxin conjugate IAA-lysine may serve as a ligand for PmeR. Our findings reveal a complex signaling network through which IAA modulates bacterial gene expression and emphasize the role of PmeR in acclimating Pto DC3000 for growth in plant tissue. IMPORTANCE Phytopathogenic bacteria respond to host signals through intricate signaling mechanisms that regulate bacterial growth and virulence. One key host signal involved in these interactions is the phytohormone indole-3-acetic acid (IAA), which has been shown to promote Pseudomonas syringae strain Pto DC3000 pathogenicity in Arabidopsis thaliana and tomato. However, the mechanisms for sensing and responding to IAA remain unclear. Here, we identify pmeR , encoding a TetR-like family transcriptional regulator (TFR), as a key component of the bacterial response to auxin. To our knowledge, pmeR represents the first characterized TFR to participate in bacterial auxin perception. We demonstrate that pmeR is induced by IAA and regulates a set of auxin-responsive genes, several of which are implicated in virulence. We also identify the IAA conjugate IAA-lysine as a potential ligand for PmeR. These findings uncover a novel regulatory mechanism underlying bacterial auxin perception and suggest strategies for controlling bacterial plant diseases through targeted hormone-responsive pathways.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

IAA induced bacterial pmeR.

Taxon
Arabidopsis thalianaArabidopsis thalianae6
Treatment
IAAe0
Interactor
Pto DC3000e7pathogen
Gene
pmeRe0
Outcome
pmeR is inducede0
Direction
inducede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“we show that pmeR is induced by IAA”

✓ located verbatim in the source · abstract, characters 749–784 · show in text ↑
e6

“growth in Arabidopsis thaliana .”

✓ located verbatim in the source · abstract, characters 1073–1105 · show in text ↑
e7

“gene expression in Pto DC3000.”

✓ located verbatim in the source · abstract, characters 667–697 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

pmeR regulates several bacterial auxin-responsive genes.

Taxon
Arabidopsis thalianaArabidopsis thalianae6
Interactor
Pto DC3000e7pathogen
Gene
pmeRe0
Outcome
regulates several auxin-responsive genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“pmeR is induced by IAA and regulates several auxin-responsive genes”

✓ located verbatim in the source · abstract, characters 762–829 · show in text ↑
e6

“growth in Arabidopsis thaliana .”

✓ located verbatim in the source · abstract, characters 1073–1105 · show in text ↑
e7

“gene expression in Pto DC3000.”

✓ located verbatim in the source · abstract, characters 667–697 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

pmeR represses its own expression.

Taxon
Arabidopsis thalianaArabidopsis thalianae6
Interactor
Pto DC3000e7pathogen
Gene
pmeRe1
Outcome
repressor of its own expressione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“as a repressor of its own expression”

✓ located verbatim in the source · abstract, characters 907–943 · show in text ↑
e1

“pmeR plays two different roles”

✓ located verbatim in the source · abstract, characters 831–861 · show in text ↑
e6

“growth in Arabidopsis thaliana .”

✓ located verbatim in the source · abstract, characters 1073–1105 · show in text ↑
e7

“gene expression in Pto DC3000.”

✓ located verbatim in the source · abstract, characters 667–697 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

pmeR activates other auxin-responsive genes.

Taxon
Arabidopsis thalianaArabidopsis thalianae6
Interactor
Pto DC3000e7pathogen
Gene
pmeRe1
Outcome
activator of other genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“as an activator of other genes”

✓ located verbatim in the source · abstract, characters 948–978 · show in text ↑
e1

“pmeR plays two different roles in the regulation of auxin-responsive genes”

✓ located verbatim in the source · abstract, characters 831–905 · show in text ↑
e6

“growth in Arabidopsis thaliana .”

✓ located verbatim in the source · abstract, characters 1073–1105 · show in text ↑
e7

“gene expression in Pto DC3000.”

✓ located verbatim in the source · abstract, characters 667–697 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Disruption of pmeR reduced bacterial growth in Arabidopsis thaliana.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
disruption of pmeRe0
Interactor
Pto DC3000e7pathogen
Gene
pmeRe0
Outcome
bacterial growthe0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“disruption of pmeR results in reduced bacterial growth in Arabidopsis thaliana”

✓ located verbatim in the source · abstract, characters 1025–1103 · show in text ↑
e7

“gene expression in Pto DC3000.”

✓ located verbatim in the source · abstract, characters 667–697 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PmeR did not appear to bind IAA directly.

Taxon
Arabidopsis thalianaArabidopsis thalianae6
Interactor
Pto DC3000e7pathogen
Gene
PmeRe1
Outcome
does not appear to directly bind IAAe0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“it does not appear to directly bind IAA”

✓ located verbatim in the source · abstract, characters 1188–1227 · show in text ↑
e1

“PmeR de-represses the transcription of pmeR upon IAA treatment”

✓ located verbatim in the source · abstract, characters 1124–1186 · show in text ↑
e6

“growth in Arabidopsis thaliana .”

✓ located verbatim in the source · abstract, characters 1073–1105 · show in text ↑
e7

“gene expression in Pto DC3000.”

✓ located verbatim in the source · abstract, characters 667–697 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

IAA-lysine may serve as a ligand for PmeR.

Taxon
Arabidopsis thalianaArabidopsis thalianae6
Interactor
Pto DC3000e7pathogen
Gene
PmeRe0
Compound
IAA-lysinee0
Outcome
may serve as a ligand for PmeRe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“IAA-lysine may serve as a ligand for PmeR”

✓ located verbatim in the source · abstract, characters 1295–1336 · show in text ↑
e6

“growth in Arabidopsis thaliana .”

✓ located verbatim in the source · abstract, characters 1073–1105 · show in text ↑
e7

“gene expression in Pto DC3000.”

✓ located verbatim in the source · abstract, characters 667–697 · show in text ↑

loss of function · disease · Arabidopsis thaliana (thale cress)Positive and negative results

82 papers: 31 positive, 51 negative or no effect

50 papers in the same direction as this paper · 31 in the opposite direction

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.