Abstract
ABSTRACT Plant pathogenic bacteria, such as Pseudomonas syringae strain Pto DC3000, respond to host signals through complex signaling networks that regulate bacterial growth and virulence. The plant hormone indole-3-acetic acid (IAA), also known as auxin, promotes bacterial pathogenesis via multiple mechanisms, including through reprogramming of bacterial transcription. However, the mechanisms that Pto DC3000 uses to sense and respond to auxin are not well understood. Here, we identify a novel bacterial auxin-signaling mechanism mediated by pmeR , which encodes a TetR-like family transcriptional repressor that acts as an important regulator of IAA-responsive gene expression in Pto DC3000. Using qRT-PCR and transcriptional reporter assays, we show that pmeR is induced by IAA and regulates several auxin-responsive genes. pmeR plays two different roles in the regulation of auxin-responsive genes: as a repressor of its own expression and as an activator of other genes. Plant infection assays further show that the disruption of pmeR results in reduced bacterial growth in Arabidopsis thaliana . Notably, although PmeR de-represses the transcription of pmeR upon IAA treatment, it does not appear to directly bind IAA. Rather, our biochemical results indicate that the auxin conjugate IAA-lysine may serve as a ligand for PmeR. Our findings reveal a complex signaling network through which IAA modulates bacterial gene expression and emphasize the role of PmeR in acclimating Pto DC3000 for growth in plant tissue. IMPORTANCE Phytopathogenic bacteria respond to host signals through intricate signaling mechanisms that regulate bacterial growth and virulence. One key host signal involved in these interactions is the phytohormone indole-3-acetic acid (IAA), which has been shown to promote Pseudomonas syringae strain Pto DC3000 pathogenicity in Arabidopsis thaliana and tomato. However, the mechanisms for sensing and responding to IAA remain unclear. Here, we identify pmeR , encoding a TetR-like family transcriptional regulator (TFR), as a key component of the bacterial response to auxin. To our knowledge, pmeR represents the first characterized TFR to participate in bacterial auxin perception. We demonstrate that pmeR is induced by IAA and regulates a set of auxin-responsive genes, several of which are implicated in virulence. We also identify the IAA conjugate IAA-lysine as a potential ligand for PmeR. These findings uncover a novel regulatory mechanism underlying bacterial auxin perception and suggest strategies for controlling bacterial plant diseases through targeted hormone-responsive pathways.
Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗
The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.
Claims 7
Claim · model-written summary
IAA induced bacterial pmeR.
- Taxon
- Arabidopsis thaliana
Arabidopsis thalianae6 - Treatment
- IAAe0
- Interactor
- Pto DC3000e7pathogen
- Gene
- pmeRe0
- Outcome
- pmeR is inducede0
- Direction
- inducede0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“we show that pmeR is induced by IAA”
e6“growth in Arabidopsis thaliana .”
e7“gene expression in Pto DC3000.”
Claim · model-written summary
pmeR regulates several bacterial auxin-responsive genes.
- Taxon
- Arabidopsis thaliana
Arabidopsis thalianae6 - Interactor
- Pto DC3000e7pathogen
- Gene
- pmeRe0
- Outcome
- regulates several auxin-responsive genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“pmeR is induced by IAA and regulates several auxin-responsive genes”
e6“growth in Arabidopsis thaliana .”
e7“gene expression in Pto DC3000.”
Claim · model-written summary
pmeR represses its own expression.
- Taxon
- Arabidopsis thaliana
Arabidopsis thalianae6 - Interactor
- Pto DC3000e7pathogen
- Gene
- pmeRe1
- Outcome
- repressor of its own expressione0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“as a repressor of its own expression”
e1“pmeR plays two different roles”
e6“growth in Arabidopsis thaliana .”
e7“gene expression in Pto DC3000.”
Claim · model-written summary
pmeR activates other auxin-responsive genes.
- Taxon
- Arabidopsis thaliana
Arabidopsis thalianae6 - Interactor
- Pto DC3000e7pathogen
- Gene
- pmeRe1
- Outcome
- activator of other genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“as an activator of other genes”
e1“pmeR plays two different roles in the regulation of auxin-responsive genes”
e6“growth in Arabidopsis thaliana .”
e7“gene expression in Pto DC3000.”
Claim · model-written summary
Disruption of pmeR reduced bacterial growth in Arabidopsis thaliana.
- Taxon
- Arabidopsis thaliana
Arabidopsis thalianae0 - Treatment
- disruption of pmeRe0
- Interactor
- Pto DC3000e7pathogen
- Gene
- pmeRe0
- Outcome
- bacterial growthe0
- Direction
- reducede0
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“disruption of pmeR results in reduced bacterial growth in Arabidopsis thaliana”
e7“gene expression in Pto DC3000.”
Claim · model-written summary
PmeR did not appear to bind IAA directly.
- Taxon
- Arabidopsis thaliana
Arabidopsis thalianae6 - Interactor
- Pto DC3000e7pathogen
- Gene
- PmeRe1
- Outcome
- does not appear to directly bind IAAe0
Not reportedDirection
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“it does not appear to directly bind IAA”
e1“PmeR de-represses the transcription of pmeR upon IAA treatment”
e6“growth in Arabidopsis thaliana .”
e7“gene expression in Pto DC3000.”
Claim · model-written summary
IAA-lysine may serve as a ligand for PmeR.
- Taxon
- Arabidopsis thaliana
Arabidopsis thalianae6 - Interactor
- Pto DC3000e7pathogen
- Gene
- PmeRe0
- Compound
- IAA-lysinee0
- Outcome
- may serve as a ligand for PmeRe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Verbatim
e0“IAA-lysine may serve as a ligand for PmeR”
e6“growth in Arabidopsis thaliana .”
e7“gene expression in Pto DC3000.”
The same questions in other papers
loss of function · disease · Arabidopsis thaliana (thale cress)Positive and negative results
50 papers in the same direction as this paper · 31 in the opposite direction
- positive
- positive
- positive
78 papers more in this group
See all 82 papers →Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.