Abstract
The NAC gene family is an important transcription factor unique to plants, widely involved in plant growth, development, and response to different stress. The physicochemical properties, phylogenetics, chromosome localization, gene structure and motif, collinearity, and gene expression under stress of the PavNAC transcription factor family in sweet cherry were analyzed. The results showed that the whole genome sequence of sweet cherry contains 132 PavNAC transcription factor genes, which are unevenly distributed on 8 chromosomes and divided into 10 subfamilies. The protein length of PavNAC ranged from 152 to 755 amino acids, and the CDS length ranged from 459 to 2268. The gene structure showed that most PavNAC members contain 3 exons and 10 motifs. Collinearity analysis result showed that 54 PavNAC genes in sweet cherry have homologous genes in Arabidopsis . Transcriptome data of different development stages of ‘Hong Deng’ and ‘Black Pearl’ showed that PavNAC42 and PavNAC101 were specifically expressed in both varieties. Finally, expression of 15 PavNAC genes under different abiotic stress were analyzed by real-time PCR. The results showed that PavNAC70 , PavNAC9 , and PavNAC10 were induced by low temperature. PavNAC70 and PavNAC81 were both induced by salt and PEG stresses. The study laid the foundation for subsequent molecular breeding and further exploration of the function of PavNAC genes in sweet cherry.
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Claims 11
Claim · model-written summary
The sweet cherry genome contains 132 PavNAC transcription factor genes.
- Taxon
- sweet cherry
Prunus aviume0 - Outcome
- PavNAC transcription factor genese0
- Value
- 132e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e0“The results showed that the whole genome sequence of sweet cherry contains 132 PavNAC transcription factor genes, which are unevenly distributed on 8 chromosomes and divided into 10 subfamilies”
Claim · model-written summary
The PavNAC genes are unevenly distributed on 8 chromosomes in sweet cherry.
- Taxon
- sweet cherryPrunus aviume0
- Outcome
- unevenly distributede0
- Value
- 8 chromosomese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e0“The results showed that the whole genome sequence of sweet cherry contains 132 PavNAC transcription factor genes, which are unevenly distributed on 8 chromosomes and divided into 10 subfamilies”
Claim · model-written summary
The PavNAC genes are divided into 10 subfamilies in sweet cherry.
- Taxon
- sweet cherryPrunus aviume0
- Outcome
- divided intoe0
- Value
- 10 subfamiliese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e0“The results showed that the whole genome sequence of sweet cherry contains 132 PavNAC transcription factor genes, which are unevenly distributed on 8 chromosomes and divided into 10 subfamilies”
Claim · model-written summary
PavNAC protein length ranged from 152 to 755 amino acids.
- Taxon
- sweet cherryPrunus aviumt0
- Outcome
- protein lengthe1
- Value
- 152 to 755 amino acidse1
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e1“The protein length of PavNAC ranged from 152 to 755 amino acids”
Claim · model-written summary
PavNAC CDS length ranged from 459 to 2268.
- Taxon
- sweet cherryPrunus aviumt0
- Outcome
- CDS lengthe2
- Value
- 459 to 2268e2
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e2“the CDS length ranged from 459 to 2268”
Claim · model-written summary
Most PavNAC members contain 3 exons.
- Taxon
- sweet cherryPrunus aviumt0
- Outcome
- PavNAC memberse3
- Value
- 3 exonse3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e3“most PavNAC members contain 3 exons and 10 motifs”
Claim · model-written summary
Most PavNAC members contain 10 motifs.
- Taxon
- sweet cherryPrunus aviumt0
- Outcome
- PavNAC memberse3
- Value
- 10 motifse3
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e3“most PavNAC members contain 3 exons and 10 motifs”
Claim · model-written summary
Fifty-four sweet cherry PavNAC genes have homologous genes in Arabidopsis.
- Taxon
- sweet cherryPrunus aviume4
- Outcome
- homologous genes in Arabidopsise4
- Value
- 54 PavNAC genese4
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e4“Collinearity analysis result showed that 54 PavNAC genes in sweet cherry have homologous genes in Arabidopsis”
Claim · model-written summary
PavNAC42 and PavNAC101 were specifically expressed in both sweet cherry varieties across development stages.
- Taxon
- sweet cherryPrunus aviumt0
- Material
- ‘Hong Deng’ and ‘Black Pearl’e5
- Organ / stage
- different development stagese5
- Gene
- PavNAC42 and PavNAC101e5
- Outcome
- specifically expressede5
Not reportedDirection
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e5“Transcriptome data of different development stages of ‘Hong Deng’ and ‘Black Pearl’ showed that PavNAC42 and PavNAC101 were specifically expressed in both varieties”
Claim · model-written summary
Low temperature induced PavNAC70, PavNAC9 and PavNAC10 in sweet cherry.
- Taxon
- sweet cherryPrunus aviumt0
- Treatment
- low temperaturee6
- Gene
- PavNAC70 , PavNAC9 , and PavNAC10e6
- Outcome
- expressione7
- Direction
- inducede6
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e6“The results showed that PavNAC70 , PavNAC9 , and PavNAC10 were induced by low temperature”
e7“expression of 15 PavNAC genes under different abiotic stress were analyzed by real-time PCR”
Claim · model-written summary
PavNAC70 and PavNAC81 were induced by salt and PEG stresses in sweet cherry.
- Taxon
- sweet cherryPrunus aviumt0
- Treatment
- salt and PEG stressese6
- Gene
- PavNAC70 and PavNAC81e6
- Outcome
- expressione7
- Direction
- inducede6
Not reportedComparator
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“sweet cherry PavNAC gene family”
e7“expression of 15 PavNAC genes under different abiotic stress were analyzed by real-time PCR”
e6“PavNAC70 and PavNAC81 were both induced by salt and PEG stresses”
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- positive
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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.