Paper · 2021 · ScholarWorks -A service of University of Vermont Libraries (University of Vermont)

Organic Amendments Alter Soil Hydrology and Belowground Microbiome of Tomato (Solanum Lycopersicum)

Readyhough, Taylor

20
claims
40
verbatim quotes
0
citations
4
research areas
—
Not open access

Abstract

Manure-derived organic amendments are a cost-effective tool that provide many potential benefits to plant and soil health. For example, amendment applications may increase soil fertility, improve soil structure, stimulate microbial activity, and suppress plant pathogens. Yet, responses to these applications may have unintended consequences. Inherent variability in the physical, chemical, and biological characteristics of these materials can result in inconsistent outcomes observed after their application. These differences are manifested in plant growth, soil physiochemical properties, and soil microbial community composition. Popular manure-derived organic amendments include dairy manure compost and poultry manure pellets. Dairy manure is an abundant resource on many diversified farms and poultry manure pellets are an economical and commercially available source of nitrogen. Despite a growing body of research demonstrating the plant growth enhancing and disease suppressing potential of vermicompost, its’ relative price and availability has limited its widespread adoption in field-grown vegetable production systems. Additional research which determines how and why vermicompost performs differently than alternative amendments is necessary to justify its greater adoption. A container study was conducted to evaluate how dairy manure compost, dairy manure compost-derived vermicompost, and dehydrated poultry manure pellets impact the tripartite relationship among plant growth, soil physiochemical properties, and microbial community composition. Organic amendments increased soil porosity and soil water holding capacity but delayed plant maturation and decreased plant biomass. Of those treated with organic amendments, vermicompost-amended plants displayed the greatest root growth and overall plant health through time. Distinct microbial communities were detected for each treatment, with an abundance of Massilia, Chryseolinea, Scedosporium, and Acinetobacter distinguishing the control, vermicompost, dairy manure compost, and dehydrated poultry manure pellet treatments, respectively. Known ecological roles of these organisms support the observations made in this study: Massilia and Chryeolinea promote plant growth, Scedosporium abundance reflects the immaturity of the dairy manure compost provided, and Acinetobacter, among several taxa present in the poultry pellet-amended treatment, highlights existing concerns about the safety of poultry manure-based fertilizers in agriculture. This study validates that organic amendments alter the rhizosphere microbiome by influencing plant growth and soil physiochemical properties. In addition, this study highlights the impact of organic amendment application on the physical soil environment and the influence this change has, both directly and indirectly, on soil microbial community composition. Furthermore, this study demonstrates that there is a strong interaction between root growth and the spatial heterogeneity of soil and root-associated microbial communities. The varied response to organic amendment application in this study demonstrates that a more comprehensive characterization of these materials, and their impact on the soil environment, is required to successfully utilize these products in an effort to improve soil health and modify soil microbial communities. While highlighting a widespread need for additional research, this study serves to suggest that vermicompost is a valuable tool to promote plant health and manage disease and supports the adoption of a vermicomposting curing step to stabilize manure-derived fertilizer products.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 20

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Organic amendments increased soil porosity and water holding capacity in the tomato container study.

Treatment
Organic amendmentse0
Outcome
soil porosity and soil water holding capacitye0
Direction
increasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Organic amendments increased soil porosity and soil water holding capacity but delayed plant maturation and decreased plant biomass.”

✓ located verbatim in the source · abstract, characters 1566–1698 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Organic amendments delayed tomato maturation.

Treatment
Organic amendmentse0
Outcome
plant maturatione0
Direction
delayede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Organic amendments increased soil porosity and soil water holding capacity but delayed plant maturation and decreased plant biomass.”

✓ located verbatim in the source · abstract, characters 1566–1698 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Organic amendments decreased tomato biomass.

Treatment
Organic amendmentse0
Outcome
plant biomasse0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Organic amendments increased soil porosity and soil water holding capacity but delayed plant maturation and decreased plant biomass.”

✓ located verbatim in the source · abstract, characters 1566–1698 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Among amended tomato plants, vermicompost plants had the greatest root growth.

Treatment
vermicompost-amendede0
Outcome
root growthe0
Direction
greateste0
Comparator
those treated with organic amendmentse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Of those treated with organic amendments, vermicompost-amended plants displayed the greatest root growth and overall plant health through time.”

✓ located verbatim in the source · abstract, characters 1699–1842 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Among amended tomato plants, vermicompost plants had the greatest overall health over time.

Treatment
vermicompost-amendede0
Outcome
overall plant healthe0
Direction
greateste0
Comparator
those treated with organic amendmentse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Of those treated with organic amendments, vermicompost-amended plants displayed the greatest root growth and overall plant health through time.”

✓ located verbatim in the source · abstract, characters 1699–1842 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Each amendment treatment produced a distinct tomato-associated microbial community.

Treatment
each treatmente0
Outcome
Distinct microbial communitiese0

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Distinct microbial communities were detected for each treatment”

✓ located verbatim in the source · abstract, characters 1843–1906 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Massilia abundance distinguished the tomato control community.

Treatment
controle0
Interactor
MassiliaMassiliae0other
Outcome
abundance of Massiliae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Massilia
Massilia · Interactor · picture from its Wikimedia Commons categoryHong-Hui Zhu · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“an abundance of Massilia, Chryseolinea, Scedosporium, and Acinetobacter distinguishing the control, vermicompost, dairy manure compost, and dehydrated poultry manure pellet treatments, respectively.”

✓ located verbatim in the source · abstract, characters 1913–2111 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Chryseolinea abundance distinguished vermicompost-amended tomato soil.

Treatment
vermicomposte0
Interactor
ChryseolineaChryseolineae0other
Outcome
Chryseolineae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“an abundance of Massilia, Chryseolinea, Scedosporium, and Acinetobacter distinguishing the control, vermicompost, dairy manure compost, and dehydrated poultry manure pellet treatments, respectively.”

✓ located verbatim in the source · abstract, characters 1913–2111 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Scedosporium abundance distinguished dairy manure compost-amended tomato soil.

Treatment
dairy manure composte0
Interactor
ScedosporiumScedosporiume0other
Outcome
Scedosporiume0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Scedosporium
Scedosporium · InteractorMedmyco at English Wikipedia · CC0 · Wikimedia Commons ↗

Verbatim

e0

“an abundance of Massilia, Chryseolinea, Scedosporium, and Acinetobacter distinguishing the control, vermicompost, dairy manure compost, and dehydrated poultry manure pellet treatments, respectively.”

✓ located verbatim in the source · abstract, characters 1913–2111 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Acinetobacter abundance distinguished poultry pellet-amended tomato soil.

Treatment
dehydrated poultry manure pellet treatmentse0
Interactor
AcinetobacterAcinetobactere0other
Outcome
Acinetobactere0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Acinetobacter
Acinetobacter · Interactor · picture of the genus (one of its species)http://phil.cdc.gov/PHIL_Images/20041209/c9cbf359322b40e08fab8a6129c1be16/6498_lores.jpg · Public domain · Wikimedia Commons ↗

Verbatim

e0

“an abundance of Massilia, Chryseolinea, Scedosporium, and Acinetobacter distinguishing the control, vermicompost, dairy manure compost, and dehydrated poultry manure pellet treatments, respectively.”

✓ located verbatim in the source · abstract, characters 1913–2111 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors interpret Massilia and Chryseolinea as promoting tomato growth.

Interactor
MassiliaMassiliae0symbiont
Outcome
plant growthe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Massilia
Massilia · Interactor · picture from its Wikimedia Commons categoryHong-Hui Zhu · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Massilia and Chryeolinea promote plant growth”

✓ located verbatim in the source · abstract, characters 2199–2244 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors interpret Chryeolinea as promoting tomato growth.

Interactor
Chryeolineae0symbiont
Outcome
plant growthe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Massilia and Chryeolinea promote plant growth”

✓ located verbatim in the source · abstract, characters 2199–2244 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Associationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Scedosporium abundance was interpreted as indicating immature dairy manure compost.

Treatment
dairy manure composte0
Interactor
ScedosporiumScedosporiume0other
Outcome
Scedosporium abundancee0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Scedosporium
Scedosporium · InteractorMedmyco at English Wikipedia · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Scedosporium abundance reflects the immaturity of the dairy manure compost provided”

✓ located verbatim in the source · abstract, characters 2246–2329 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Associationauthor interpretationoriginal resultnegativemeasured

Claim · model-written summary

Acinetobacter in poultry pellet-amended tomato soil was interpreted as raising fertilizer safety concerns.

Treatment
poultry pellet-amended treatmente0
Interactor
AcinetobacterAcinetobactere0other
Outcome
safety of poultry manure-based fertilizerse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Acinetobacter
Acinetobacter · Interactor · picture of the genus (one of its species)http://phil.cdc.gov/PHIL_Images/20041209/c9cbf359322b40e08fab8a6129c1be16/6498_lores.jpg · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Acinetobacter, among several taxa present in the poultry pellet-amended treatment, highlights existing concerns about the safety of poultry manure-based fertilizers in agriculture.”

✓ located verbatim in the source · abstract, characters 2335–2515 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Organic amendments altered tomato rhizosphere microbiome through plant growth and soil properties.

Treatment
organic amendmentse0
Outcome
rhizosphere microbiomee0
Qualifier
influencing plant growth and soil physiochemical propertiese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“organic amendments alter the rhizosphere microbiome by influencing plant growth and soil physiochemical properties.”

✓ located verbatim in the source · abstract, characters 2542–2657 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The physical soil environment changed by amendments influenced tomato-associated microbial communities.

Treatment
organic amendment applicatione0
Outcome
soil microbial community compositione0
Qualifier
physical soil environmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the impact of organic amendment application on the physical soil environment and the influence this change has, both directly and indirectly, on soil microbial community composition.”

✓ located verbatim in the source · abstract, characters 2693–2875 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Tomato root growth interacted strongly with spatial heterogeneity of soil and root-associated microbial communities.

Organ / stage
roote0
Outcome
root growthe0
Qualifier
spatial heterogeneity of soil and root-associated microbial communitiese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“there is a strong interaction between root growth and the spatial heterogeneity of soil and root-associated microbial communities.”

✓ located verbatim in the source · abstract, characters 2918–3048 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors recommend more comprehensive characterization of amendments and soil impacts for their use.

Outcome
a more comprehensive characterization of these materials, and their impact on the soil environmente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“a more comprehensive characterization of these materials, and their impact on the soil environment, is required to successfully utilize these products”

✓ located verbatim in the source · abstract, characters 3134–3284 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors suggest vermicompost to promote plant health and manage disease.

Treatment
vermicomposte0
Outcome
promote plant health and manage diseasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“vermicompost is a valuable tool to promote plant health and manage disease”

✓ located verbatim in the source · abstract, characters 3456–3530 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors support a vermicomposting curing step to stabilize manure-derived fertilizers.

Outcome
adoption of a vermicomposting curing step to stabilize manure-derived fertilizer productse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“supports the adoption of a vermicomposting curing step to stabilize manure-derived fertilizer products.”

✓ located verbatim in the source · abstract, characters 3535–3638 · show in text ↑
t0

“Tomato”

✓ located verbatim in the source · title, characters 70–76 · show in text ↑

organic · growth · Solanum lycopersicum (tomato)Positive and negative results

31 papers: 22 positive, 9 negative or no effect

8 papers in the same direction as this paper · 22 in the opposite direction

  1. positive
  2. positive
  3. positive

27 papers more in this group

See all 31 papers →

fertilization · growth · Solanum lycopersicum (tomato)Positive and negative results

668 papers: 567 positive, 101 negative or no effect

566 papers in the same direction as this paper · 93 in the opposite direction · 8 reporting no difference from an alternative

  1. no effect
  2. negative
  3. negative

664 papers more in this group

See all 668 papers →

organic · phenology · Solanum lycopersicum (tomato)Results agree

2 papers: 0 positive, 2 negative or no effect

1 paper in the same direction as this paper

  1. negative
See all 2 papers →

organic · soil: physics · Solanum lycopersicum (tomato)Results agree

6 papers: 6 positive, 0 negative or no effect

5 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

2 papers more in this group

See all 6 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.