Paper · 2026 · Nature Plants

Carotenoid biosynthesis drives root plasticity through aerenchyma and iron plaque formation in rice

Jeevan Kumar Shrestha; Chih-Yu Lin; Jian You Wang; et al.

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claims
12
verbatim quotes
3
citations
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Open access · cc-by-nc-nd

Abstract

Rice roots develop aerenchyma, which transports oxygen from shoots to roots, facilitating adaptation to waterlogged conditions. This oxygen oxidizes ferrous ions into ferric compounds, forming iron plaque that mitigates iron toxicity. However, the molecular mechanisms linking aerenchyma and iron plaque formation remain poorly understood. Here we identified a rice mutant (AZ1302) defective in both aerenchyma and iron plaque formation, with the causal mutation mapped to the PHYTOENE SYNTHASE 2 (OsPSY2) gene. CRISPR–Cas9-induced psy2 mutants exhibited reduced levels of carotenoid-derived hormones, strigolactones and abscisic acid, in roots. In psy2 mutants, exogenous application of strigolactones rescued aerenchyma formation, while abscisic acid restored iron plaque deposition, providing evidence for distinct hormonal regulatory functions in the two processes. These findings revise the current understanding by dissociating the roles of aerenchyma and iron plaque formation, establishing a role for OsPSY2 in integrating hormonal signalling to drive root plasticity and offering new insights into plant adaptation under environmental stress. Shrestha et al. reveal that rice PHYTOENE SYNTHASE 2 (OsPSY2) coordinates the carotenoid-derived biosynthesis of abscisic acid and strigolactones, which independently govern iron plaque deposition and aerenchyma development, respectively.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc-nd. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 5

Observationobservedoriginal resultmeasured

Claim · model-written summary

Rice mutant AZ1302 was defective in aerenchyma and iron plaque formation.

Material
AZ1302e0
Outcome
aerenchyma and iron plaque formatione0
Direction
defectivee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“rice mutant (AZ1302) defective in both aerenchyma and iron plaque formation”

✓ located verbatim in the source · abstract, characters 361–436 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 95–99 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The causal mutation mapped to OsPSY2.

Gene
PHYTOENE SYNTHASE 2 (OsPSY2)e0
Outcome
causal mutatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“causal mutation mapped to the PHYTOENE SYNTHASE 2 (OsPSY2) gene”

✓ located verbatim in the source · abstract, characters 447–510 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 95–99 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

psy2 mutant roots had reduced strigolactone and abscisic acid levels.

Material
psy2 mutantse0
Organ / stage
rootse0
Treatment
CRISPR–Cas9-induced psy2 mutantse0
Outcome
levels of carotenoid-derived hormones, strigolactones and abscisic acide0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“CRISPR–Cas9-induced psy2 mutants exhibited reduced levels of carotenoid-derived hormones, strigolactones and abscisic acid, in roots”

✓ located verbatim in the source · abstract, characters 512–644 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 95–99 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Strigolactone application restored aerenchyma formation in psy2 mutants.

Treatment
exogenous application of strigolactonese0
Outcome
aerenchyma formatione0
Direction
rescuede0
Comparator
psy2 mutantse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“exogenous application of strigolactones rescued aerenchyma formation”

✓ located verbatim in the source · abstract, characters 663–731 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 95–99 · show in text ↑
e1

“In psy2 mutants”

✓ located verbatim in the source · abstract, characters 646–661 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Abscisic acid application restored iron plaque deposition in psy2 mutants.

Treatment
abscisic acide0
Outcome
iron plaque depositione0
Direction
restorede0
Comparator
psy2 mutantse1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“abscisic acid restored iron plaque deposition”

✓ located verbatim in the source · abstract, characters 739–784 · show in text ↑
t0

“rice”

✓ located verbatim in the source · title, characters 95–99 · show in text ↑
e1

“In psy2 mutants”

✓ located verbatim in the source · abstract, characters 646–661 · show in text ↑