Paper · 2026 · Industrial Crops and Products

Mycolicibacterium frederiksbergense SR338 enhanced root growth and active compound accumulation of Scrophularia ningpoensis by reshaping its rhizosphere microbial community and root exudate profile

Qingmei Sun; Yutong Wu; Qiongxiao Wang; et al.

14
claims
26
verbatim quotes
0
citations
3
research areas
✓
Open access · cc-by-nc

Abstract

Scrophularia ningpoensis Hemsl., whose roots (Scrophulariae Radix or Xuanshen) are an essential traditional Chinese medicinal herb with high clinical and economic value, is used to treat a variety of ailments. Its cultivation, however, is limited by reduced root biomass and lower accumulation of bioactive compounds. Biofertilizers show promise for boosting plant growth and secondary metabolism, but their use in S. ningpoensis cultivation remains underexplored. This study explored the use of biofertilizers in S. ningpoensis cultivation through the screening of substrate formulations co-fermented with 12 fungal and bacterial isolates. Field experiments evaluated the efficacy of these biofertilizers in enhancing root growth and active compound content. A total of three effective biofertilizers were identified—SR75 ( Plectosphaerella sp.), SR338 ( Mycolicibacterium frederiksbergense ), and SR327 ( Pseudomonas sp.)—with SR338 demonstrating the most significant impact ( P < 0.05). SR338 increased the root fresh weight of S. ningpoensis by 42.83% and significantly elevated levels of harpaside, caffeic acid, p-coumaric acid, and acteoside. While SR338 did not alter rhizosphere soil properties, it modulated root exudation by promoting beneficial compounds and suppressing harmful ones. Additionally, SR338 enriched beneficial rhizosphere microorganisms while suppressing pathogenic taxa, and specific root exudates were significantly correlated with shifts in microbial composition. Functional validation showed Arthrobacter oryzae was positively associated with nystose, a relationship that promoted SR338 growth. Application of either SR338 or 3-(4-hydroxyphenyl)-propionic acid significantly inhibited the growth of Trichoderma hamatum . Overall, the SR338 biofertilizer enhanced root growth and active compound accumulation by reshaping the microbial community and root exudate profile, demonstrating its potential for improving S. ningpoensis cultivation. • Biofertilizers boosted growth and active compounds in Scrophularia ningpoensis . • SR338 ( Mycolicibacterium frederiksbergense ) reshaped Scrophularia ningpoensis root exudation. • SR338 enriched beneficial rhizosphere microbes and suppressed pathogens. • Root exudates and rhizosphere microbes acted synergistically.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc. Read at the source ↗

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Claims 14

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Three biofertilizers were identified as effective.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Outcome
three effective biofertilizerse0
Value
threee0

Verbatim

e0

“A total of three effective biofertilizers were identified—SR75 ( Plectosphaerella sp.), SR338 ( Mycolicibacterium frederiksbergense ), and SR327 ( Pseudomonas sp.)—with SR338 demonstrating the most significant impact ( P < 0.05).”

✓ located verbatim in the source · abstract, characters 760–989 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR338 increased root fresh weight by 42.83%.

Taxon
S. ningpoensisScrophularia ningpoensise0
Treatment
SR338e0
Interactor
Mycolicibacterium frederiksbergenseMycolicibacterium frederiksbergenset0symbiont
Outcome
root fresh weighte0
Direction
increasede0
Value
42.83%e0

Not reportedComparator

Verbatim

e0

“SR338 increased the root fresh weight of S. ningpoensis by 42.83%”

✓ located verbatim in the source · abstract, characters 990–1055 · show in text ↑
t0

“Mycolicibacterium frederiksbergense”

✓ located verbatim in the source · title, characters 0–35 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

SR338 significantly elevated harpaside, caffeic acid, and p-coumaric acid levels.

Taxon
S. ningpoensisScrophularia ningpoensise0
Treatment
SR338e0
Outcome
levels of harpaside, caffeic acid, p-coumaric acide0
Direction
elevatede0

Not reportedComparator

Verbatim

e0

“SR338 increased the root fresh weight of S. ningpoensis by 42.83% and significantly elevated levels of harpaside, caffeic acid, p-coumaric acid, and acteoside.”

✓ located verbatim in the source · abstract, characters 990–1149 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

SR338 significantly elevated acteoside levels.

Taxon
S. ningpoensisScrophularia ningpoensise0
Treatment
SR338e0
Outcome
acteosidee0
Direction
elevatede0

Not reportedComparator

Verbatim

e0

“SR338 increased the root fresh weight of S. ningpoensis by 42.83% and significantly elevated levels of harpaside, caffeic acid, p-coumaric acid, and acteoside.”

✓ located verbatim in the source · abstract, characters 990–1149 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

SR338 did not alter rhizosphere soil properties.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Treatment
SR338e0
Outcome
rhizosphere soil propertiese0
Direction
did not altere0

Not reportedComparator

Verbatim

e0

“While SR338 did not alter rhizosphere soil properties”

✓ located verbatim in the source · abstract, characters 1150–1203 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR338 promoted beneficial root exudate compounds.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Treatment
SR338e0
Outcome
beneficial rhizosphere microorganismse0
Direction
enrichede0

Not reportedComparator

Verbatim

e0

“SR338 enriched beneficial rhizosphere microorganisms while suppressing pathogenic taxa”

✓ located verbatim in the source · abstract, characters 1311–1397 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

SR338 suppressed harmful root exudate compounds.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Outcome
root exudatione0

Verbatim

e0

“it modulated root exudation by promoting beneficial compounds and suppressing harmful ones.”

✓ located verbatim in the source · abstract, characters 1205–1296 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR338 enriched beneficial rhizosphere microorganisms.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Treatment
SR338e0
Outcome
beneficial rhizosphere microorganismse0
Direction
enrichede0

Not reportedComparator

Verbatim

e0

“Additionally, SR338 enriched beneficial rhizosphere microorganisms while suppressing pathogenic taxa”

✓ located verbatim in the source · abstract, characters 1297–1397 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR338 suppressed pathogenic rhizosphere taxa.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Treatment
SR338e0
Outcome
pathogenic taxae0
Direction
suppressinge0

Not reportedComparator

Verbatim

e0

“Additionally, SR338 enriched beneficial rhizosphere microorganisms while suppressing pathogenic taxa”

✓ located verbatim in the source · abstract, characters 1297–1397 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Root exudates were significantly correlated with microbial composition changes.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Organ / stage
roote0
Outcome
shifts in microbial compositione0

Not reportedDirection

Verbatim

e0

“specific root exudates were significantly correlated with shifts in microbial composition.”

✓ located verbatim in the source · abstract, characters 1403–1493 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Arthrobacter oryzae was positively associated with nystose.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Interactor
Arthrobacter oryzaeArthrobacter oryzaee0symbiont
Compound
nystosee0
Outcome
Arthrobacter oryzaee0
Direction
positivelye0

Verbatim

e0

“Functional validation showed Arthrobacter oryzae was positively associated with nystose”

✓ located verbatim in the source · abstract, characters 1494–1581 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

The Arthrobacter oryzae and nystose relationship promoted SR338 growth.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Outcome
SR338 growthe0
Qualifier
a relationshipe0

Verbatim

e0

“a relationship that promoted SR338 growth.”

✓ located verbatim in the source · abstract, characters 1583–1625 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

SR338 application significantly inhibited Trichoderma hamatum growth.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Treatment
SR338e0
Interactor
Trichoderma hamatumTrichoderma hamatume0pathogen
Outcome
growth of Trichoderma hamatume0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trichoderma hamatum
Trichoderma hamatum · InteractorGarrett Taylor · CC0 · iNaturalist ↗

Verbatim

e0

“Application of either SR338 or 3-(4-hydroxyphenyl)-propionic acid significantly inhibited the growth of Trichoderma hamatum .”

✓ located verbatim in the source · abstract, characters 1626–1751 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

3-(4-hydroxyphenyl)-propionic acid application significantly inhibited Trichoderma hamatum growth.

Taxon
Scrophularia ningpoensisScrophularia ningpoensist0
Treatment
3-(4-hydroxyphenyl)-propionic acide0
Interactor
Trichoderma hamatumTrichoderma hamatume0pathogen
Outcome
growth of Trichoderma hamatume0
Direction
inhibitede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Trichoderma hamatum
Trichoderma hamatum · InteractorGarrett Taylor · CC0 · iNaturalist ↗

Verbatim

e0

“Application of either SR338 or 3-(4-hydroxyphenyl)-propionic acid significantly inhibited the growth of Trichoderma hamatum .”

✓ located verbatim in the source · abstract, characters 1626–1751 · show in text ↑
t0

“Scrophularia ningpoensis”

✓ located verbatim in the source · title, characters 99–123 · show in text ↑