Paper · 2026 · Frontiers in Microbiology

Isolation and identification of dark septate endophytes from sorghum roots and the effects of Alternaria destruens HN16G1 on drought and low-nutrient tolerance in sorghum seedlings

Yali Zhang; Zhenfeng Gao; Huilin Long; et al.

16
claims
40
verbatim quotes
0
citations
3
research areas
✓
Open access · cc-by

Abstract

Introduction Dark septate endophytes (DSE) are root-associated fungi that can enhance host stress tolerance, yet their diversity and function in sorghum remain unclear. Here, we investigated the culturable DSE community across 29 sorghum varieties and evaluated the symbiotic potential of key isolates. Methods Culturable DSE were isolated from sorghum rhizosphere soil and roots via plate isolation, microscopy, and colonization assessment to screen efficient colonizers. Pot experiments then analyzed symbiotic compatibility with major Chinese cultivars to identify strains with high colonization efficiency. Finally, the selected strain was evaluated for salt tolerance and its effects on drought resistance, growth promotion, and low-fertility tolerance in seedlings. Results and discussion A total of 94 DSE isolates were obtained, accounting for 30.72% of the total fungal isolates, and were classified into 30 morphotypes. The genus Alternaria emerged as the dominant group, comprising 46.67% of the isolates. Among them, strain HN16G1, isolated from Hongnuo 16 and identified as Alternaria destruens via internal transcribed spacer sequencing, demonstrated superior root colonization capability. Strain HN16G1 established stable symbiosis with all 10 commercial cultivars tested, maintaining colonization rates and intensities above 50.0 and 16.0%, respectively. Physiologically, HN16G1 exhibited moderate halotolerance, with low NaCl concentrations (0.1–0.2 mol/L) promoting mycelial growth, whereas high salt stress (0.6 mol/L) induced adaptive responses including enhanced sporulation and reduced hyphal septal distance. The strain also displayed substantial indole-3-acetic acid production, reaching 181.56 μg/mL. Inoculation with HN16G1 (5.0 × 10 5 CFU/mL) significantly improved seedling emergence and early vegetative growth in sorghum under combined drought stress (40% field capacity) and low-nutrient conditions. Notably, varieties “Hongnuo 16” and “Jinnuo 3” exhibited the most pronounced responses, with growth parameters approaching optimal levels. Colonization parameters (rate and intensity) correlated positively with plant height, root length, and biomass. Overall, these findings highlight the rich DSE diversity in sorghum roots and identify A. destruens HN16G1 as a broad-compatibility, multifunctional endophyte with promising potential for the development of microbial inoculants to enhance stress tolerance in sorghum production systems.

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Claims 16

Observationobservedoriginal resultmeasured

Claim · model-written summary

The sorghum survey yielded 94 DSE isolates, 30.72% of fungal isolates, in 30 morphotypes.

Taxon
sorghumSorghumt0
Interactor
DSEe0symbiont
Outcome
DSE isolates were obtainede0
Value
94 DSE isolatese0
Qualifier
30.72% of the total fungal isolatese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“A total of 94 DSE isolates were obtained, accounting for 30.72% of the total fungal isolates, and were classified into 30 morphotypes.”

✓ located verbatim in the source · abstract, characters 795–929 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Alternaria was the dominant DSE genus at 46.67% of isolates.

Taxon
sorghumSorghumt0
Interactor
AlternariaAlternariae0symbiont
Outcome
dominant groupe0
Value
46.67%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗
Alternaria
Alternaria · Interactor · picture of the genus (one of its species)http://phil.cdc.gov/phil_images/20030612/9/PHIL_3963_lores.jpg · Public domain · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“The genus Alternaria emerged as the dominant group, comprising 46.67% of the isolates.”

✓ located verbatim in the source · abstract, characters 930–1016 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

HN16G1 from Hongnuo 16 was identified as Alternaria destruens.

Taxon
sorghumSorghumt0
Material
Hongnuo 16e0
Interactor
Alternaria destruensAlternaria destruense0symbiont
Outcome
identified as Alternaria destruense0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“strain HN16G1, isolated from Hongnuo 16 and identified as Alternaria destruens via internal transcribed spacer sequencing”

✓ located verbatim in the source · abstract, characters 1029–1150 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

HN16G1 had superior sorghum root colonization capability.

Taxon
sorghumSorghumt0
Interactor
Alternaria destruensAlternaria destruense1symbiont
Outcome
root colonization capabilitye0
Direction
superiore0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“sorghum roots”

✓ located verbatim in the source · title, characters 61–74 · show in text ↑
e0

“demonstrated superior root colonization capability.”

✓ located verbatim in the source · abstract, characters 1152–1203 · show in text ↑
e1

“strain HN16G1, isolated from Hongnuo 16 and identified as Alternaria destruens”

✓ located verbatim in the source · abstract, characters 1029–1107 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

HN16G1 formed stable symbiosis with all 10 tested commercial cultivars.

Taxon
sorghumSorghumt0
Interactor
HN16G1e0symbiont
Outcome
stable symbiosise0
Value
10 commercial cultivarse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“Strain HN16G1 established stable symbiosis with all 10 commercial cultivars tested”

✓ located verbatim in the source · abstract, characters 1204–1286 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

HN16G1 colonization rates exceeded 50.0%.

Taxon
sorghumSorghumt0
Interactor
HN16G1e1symbiont
Outcome
colonization ratese0
Direction
abovee0
Value
50.0e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“maintaining colonization rates and intensities above 50.0 and 16.0%, respectively.”

✓ located verbatim in the source · abstract, characters 1288–1370 · show in text ↑
e1

“Strain HN16G1 established stable symbiosis”

✓ located verbatim in the source · abstract, characters 1204–1246 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

HN16G1 colonization intensity exceeded 16.0%.

Taxon
sorghumSorghumt0
Interactor
HN16G1e1symbiont
Outcome
intensitiese0
Direction
abovee0
Value
16.0%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“maintaining colonization rates and intensities above 50.0 and 16.0%, respectively.”

✓ located verbatim in the source · abstract, characters 1288–1370 · show in text ↑
e1

“Strain HN16G1 established stable symbiosis”

✓ located verbatim in the source · abstract, characters 1204–1246 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Low NaCl concentrations promoted HN16G1 mycelial growth.

Taxon
sorghumSorghumt0
Treatment
low NaCl concentrations (0.1–0.2 mol/L)e0
Interactor
HN16G1e1symbiont
Outcome
mycelial growthe0
Direction
promotinge0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“low NaCl concentrations (0.1–0.2 mol/L) promoting mycelial growth”

✓ located verbatim in the source · abstract, characters 1434–1499 · show in text ↑
e1

“HN16G1 exhibited moderate halotolerance”

✓ located verbatim in the source · abstract, characters 1388–1427 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

High salt stress enhanced HN16G1 sporulation.

Taxon
sorghumSorghumt0
Treatment
high salt stress (0.6 mol/L)e0
Interactor
HN16G1e1symbiont
Outcome
sporulatione0
Direction
enhancede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“high salt stress (0.6 mol/L) induced adaptive responses including enhanced sporulation and reduced hyphal septal distance”

✓ located verbatim in the source · abstract, characters 1509–1630 · show in text ↑
e1

“HN16G1 exhibited moderate halotolerance”

✓ located verbatim in the source · abstract, characters 1388–1427 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

High salt stress reduced HN16G1 hyphal septal distance.

Taxon
sorghumSorghumt0
Treatment
high salt stress (0.6 mol/L)e0
Interactor
HN16G1e1symbiont
Outcome
hyphal septal distancee0
Direction
reducede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“high salt stress (0.6 mol/L) induced adaptive responses including enhanced sporulation and reduced hyphal septal distance”

✓ located verbatim in the source · abstract, characters 1509–1630 · show in text ↑
e1

“HN16G1 exhibited moderate halotolerance”

✓ located verbatim in the source · abstract, characters 1388–1427 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

HN16G1 produced indole-3-acetic acid at 181.56 μg/mL.

Taxon
sorghumSorghumt0
Interactor
HN16G1e1symbiont
Outcome
indole-3-acetic acid productione0
Direction
reachinge0
Value
181.56 μg/mLe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“The strain also displayed substantial indole-3-acetic acid production, reaching 181.56 μg/mL.”

✓ located verbatim in the source · abstract, characters 1632–1725 · show in text ↑
e1

“HN16G1 exhibited moderate halotolerance”

✓ located verbatim in the source · abstract, characters 1388–1427 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

HN16G1 inoculation significantly improved sorghum seedling emergence under combined drought and low nutrients.

Taxon
sorghumSorghume0
Treatment
Inoculation with HN16G1 (5.0 × 10 5 CFU/mL)e0
Interactor
HN16G1e0symbiont
Outcome
seedling emergencee0
Direction
improvede0
Qualifier
combined drought stress (40% field capacity) and low-nutrient conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Inoculation with HN16G1 (5.0 × 10 5 CFU/mL) significantly improved seedling emergence and early vegetative growth in sorghum under combined drought stress (40% field capacity) and low-nutrient conditions.”

✓ located verbatim in the source · abstract, characters 1726–1930 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

HN16G1 inoculation significantly improved sorghum early vegetative growth under combined drought and low nutrients.

Taxon
sorghumSorghume0
Treatment
Inoculation with HN16G1 (5.0 × 10 5 CFU/mL)e0
Interactor
HN16G1e0symbiont
Outcome
early vegetative growthe0
Direction
improvede0
Qualifier
combined drought stress (40% field capacity) and low-nutrient conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Inoculation with HN16G1 (5.0 × 10 5 CFU/mL) significantly improved seedling emergence and early vegetative growth in sorghum under combined drought stress (40% field capacity) and low-nutrient conditions.”

✓ located verbatim in the source · abstract, characters 1726–1930 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Hongnuo 16 had one of the most pronounced growth responses to HN16G1.

Taxon
sorghumSorghumt0
Material
Hongnuo 16e0
Interactor
HN16G1e1symbiont
Outcome
growth parameterse0
Direction
approaching optimal levelse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“varieties “Hongnuo 16” and “Jinnuo 3” exhibited the most pronounced responses, with growth parameters approaching optimal levels.”

✓ located verbatim in the source · abstract, characters 1940–2069 · show in text ↑
e1

“Inoculation with HN16G1 (5.0 × 10 5 CFU/mL)”

✓ located verbatim in the source · abstract, characters 1726–1769 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Jinnuo 3 had one of the most pronounced growth responses to HN16G1.

Taxon
sorghumSorghumt0
Material
Jinnuo 3e0
Interactor
HN16G1e1symbiont
Outcome
growth parameterse0
Direction
approaching optimal levelse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“varieties “Hongnuo 16” and “Jinnuo 3” exhibited the most pronounced responses, with growth parameters approaching optimal levels.”

✓ located verbatim in the source · abstract, characters 1940–2069 · show in text ↑
e1

“Inoculation with HN16G1 (5.0 × 10 5 CFU/mL)”

✓ located verbatim in the source · abstract, characters 1726–1769 · show in text ↑
Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Colonization rate and intensity correlated positively with sorghum plant height, root length, and biomass.

Taxon
sorghumSorghumt0
Interactor
HN16G1e1symbiont
Outcome
plant height, root length, and biomasse0
Direction
correlated positivelye0
Qualifier
Colonization parameters (rate and intensity)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Sorghum
Sorghum · Taxon · picture of the genus (one of its species)Evelyn Simak · CC BY-SA 2.0 · Wikimedia Commons ↗

Verbatim

t0

“from sorghum roots”

✓ located verbatim in the source · title, characters 56–74 · show in text ↑
e0

“Colonization parameters (rate and intensity) correlated positively with plant height, root length, and biomass.”

✓ located verbatim in the source · abstract, characters 2070–2181 · show in text ↑
e1

“Inoculation with HN16G1 (5.0 × 10 5 CFU/mL)”

✓ located verbatim in the source · abstract, characters 1726–1769 · show in text ↑

inoculation · growth · SorghumPositive and negative results

76 papers: 65 positive, 11 negative or no effect

64 papers in the same direction as this paper · 9 in the opposite direction · 2 reporting no difference from an alternative

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