Paper · 2026 · The ISME Journal

Massilia strains facilitate root growth and reshape root microbiota through diverse salicylic acid hydrolysis pathways

Qin Han; Guanghui Zhu; Chenxi Li; et al.

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verbatim quotes
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citations
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Open access · cc-by

Abstract

Rhizosphere microbiota play an important role in maintaining plant root growth. However, the physiological and molecular basis of microbial regulation of root traits remains poorly understood. Here, we report that Massilia efficiently colonizes roots and promotes root elongation. In particular, the M117 strain of Massilia significantly inhibits salicylic acid (SA)-related immune signaling, which is required for M117-mediated root elongation. M117 can directly degrade SA, thereby reducing SA levels in the roots. Integrated omics reveal the presence of multiple SA hydrolytic pathways in M117. Among them, the NagGHAaAb pathway is strongly induced by SA. This pathway regulates root growth and is nonrandomly distributed across Massilia species. Finally, we show that M117 colonization enriches specific bacterial taxa within roots. Our findings reveal a specific pathway employed by rhizosphere bacteria to colonize roots and promote their growth and highlight a useful microbial strategy and information for balancing host immunity and growth.

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Claims 9

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Massilia efficiently colonizes roots.

Interactor
MassiliaMassiliae0symbiont
Outcome
efficiently colonizes rootse0

Not reportedTaxon

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Massilia
Massilia · Interactor · picture from its Wikimedia Commons categoryHong-Hui Zhu · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Massilia efficiently colonizes roots and promotes root elongation”

✓ located verbatim in the source · abstract, characters 214–279 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Massilia promotes root elongation.

Treatment
Massiliae0
Interactor
MassiliaMassiliae0symbiont
Outcome
root elongatione0
Direction
promotese0

Not reportedTaxonComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Massilia
Massilia · Interactor · picture from its Wikimedia Commons categoryHong-Hui Zhu · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Massilia efficiently colonizes roots and promotes root elongation”

✓ located verbatim in the source · abstract, characters 214–279 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

The M117 strain of Massilia significantly inhibits salicylic acid-related immune signaling, which is required for M117-mediated root elongation.

Treatment
M117 strain of Massiliae0
Interactor
M117 strain of Massiliae0symbiont
Outcome
salicylic acid (SA)-related immune signalinge0
Direction
inhibitse0

Not reportedTaxonComparator

Verbatim

e0

“the M117 strain of Massilia significantly inhibits salicylic acid (SA)-related immune signaling, which is required for M117-mediated root elongation”

✓ located verbatim in the source · abstract, characters 296–444 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

M117 directly degrades SA and thereby reduces SA levels in the roots.

Treatment
M117e0
Interactor
M117e0symbiont
Outcome
SA levels in the rootse0
Direction
reducinge0

Not reportedTaxonComparator

Verbatim

e0

“M117 can directly degrade SA, thereby reducing SA levels in the roots”

✓ located verbatim in the source · abstract, characters 446–515 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Integrated omics revealed multiple SA hydrolytic pathways in M117.

Outcome
multiple SA hydrolytic pathwayse0

Not reportedTaxon

Verbatim

e0

“Integrated omics reveal the presence of multiple SA hydrolytic pathways in M117”

✓ located verbatim in the source · abstract, characters 517–596 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The NagGHAaAb pathway of M117 is strongly induced by SA.

Gene
NagGHAaAb pathwaye0
Outcome
strongly induced by SAe0

Not reportedTaxon

Verbatim

e0

“Among them, the NagGHAaAb pathway is strongly induced by SA”

✓ located verbatim in the source · abstract, characters 598–657 · show in text ↑
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

The NagGHAaAb pathway regulates root growth.

Gene
NagGHAaAb pathwaye0
Outcome
root growthe0

Not reportedTaxon

Verbatim

e0

“the NagGHAaAb pathway is strongly induced by SA. This pathway regulates root growth”

✓ located verbatim in the source · abstract, characters 610–693 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The NagGHAaAb pathway is nonrandomly distributed across Massilia species.

Taxon
MassiliaMassiliae0
Outcome
nonrandomly distributed across Massilia speciese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Massilia
Massilia · Taxon · picture from its Wikimedia Commons categoryHong-Hui Zhu · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“This pathway regulates root growth and is nonrandomly distributed across Massilia species”

✓ located verbatim in the source · abstract, characters 659–748 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

M117 colonization enriches specific bacterial taxa within roots.

Treatment
M117 colonizatione0
Interactor
M117e0symbiont
Outcome
specific bacterial taxa within rootse0
Direction
enrichese0

Not reportedTaxonComparator

Verbatim

e0

“M117 colonization enriches specific bacterial taxa within roots”

✓ located verbatim in the source · abstract, characters 772–835 · show in text ↑