Search claims · PlantClaims

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Millimetric radiation decrease number of chromosomal infringements in castor-oil plant.

Taxon: castor-oil plante0
Organ / stage: rootletse0
Treatment: millimetric radiation (MMR)e0
Outcome: number of chromosomal infringementse0
Direction: decreasee0

Not reportedComparator

Verbatim

e0
“At the influence of millimetric radiation (MMR) with wavelength of 5.6 mm; density of stream of capacity of 6–10 mwt/sm2 and several minutes’ expositions on dry and presoaked seeds of tomato, castor-oil plant and dope we observed stimulation of sprouting energy and seeds germinating power, change of protein synthesis and enzymatic activity of sprouts and also decrease of the number of chromosomal infringements in cel…” Show full quote
✓ located verbatim in the source · abstract, characters 0–435

Title

The influence of millimetric radiation on plant viability: 2. The changes in seeds’ metabolism after the treatment of soaked seeds

S. N. Maslobrod; L. B. Korletyanu; A. I. Ganya Surface Engineering and Applied Electrochemistry 2010. doi:10.3103/s1068375510060128

Other claims from this paper (9)

Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in tomato.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in tomato.
Intervention effect Millimetric radiation decrease number of chromosomal infringements in tomato.
Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in castor-oil plant.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in castor-oil plant.
Intervention effect Millimetric radiation stimulation sprouting energy and seeds germinating power in dope.
Intervention effect Millimetric radiation change protein synthesis and enzymatic activity of sprouts in dope.
Intervention effect Millimetric radiation decrease number of chromosomal infringements in dope.
Mechanism Water was proposed as the primary receptor of millimetric radiation in seeds.

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Integrating GRAS-Di and GoldenGate SNP markers decreased average genetic distance between markers in all four rice RIL populations.

Outcome: average genetic distance between markerse0
Direction: decreasee0

Not reportedComparator

Verbatim

e0
“the average genetic distance between markers showed a clear decrease in the four RIL populations when we integrated markers of both linkage maps”
✓ located verbatim in the source · abstract, characters 1338–1482

Title

High-Density Linkage Maps from Japanese Rice japonica Recombinant Inbred Lines Using Genotyping by Random Amplicon Sequencing-Direct (GRAS-Di)

Fekih, Rym; Ishimaru, Yohei; Okada, Satoshi; et al. Institutional Repositories DataBase (IRDB) 2023

Other claims from this paper (9)

Method / resource GRAS-Di produced 438.7 Mbp covering 97.5% of the rice genome in RIL71.
Method / resource GRAS-Di produced 440 Mbp covering 97.3% of the rice genome in RIL98.
Method / resource GRAS-Di produced 403.1 Mbp covering 98.3% of the rice genome in RIL16.
Method / resource GRAS-Di produced 392 Mbp covering 96.1% of the rice genome in RIL91.
Method / resource Genotypic analysis identified 1050 markers in RIL71.
Method / resource Genotypic analysis identified 1285 markers in RIL98.
Method / resource Genotypic analysis identified 1708 markers in RIL16.
Method / resource Genotypic analysis identified 1704 markers in RIL91.
Method / resource The markers localized five heading-date QTLs on rice chromosomes 3, 6 and 7, previously identified as Hd1, Hd2, Hd6, Hd16 and Hd17.

Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors recommend introgressing both QTL into potato cultivars to reduce nematode density and resistance breakdown.

Taxon: potatoSolanum tuberosume0
Interactor: G. pallidaGlobodera pallidae0pathogen
Gene: GpaV(s)sple0
Outcome: introgress together GpaV(s)spl and GpaXI(s)spl into potato cultivarse0

Verbatim

e0
“introgress together GpaV(s)spl and GpaXI(s)spl into potato cultivars, in order to reduce the density of this quarantine pest in soil and to decrease the risk of selecting overcoming G. pallida subpopulations”
✓ located verbatim in the source · abstract, characters 1122–1329

Title

Resistance Quantitative Trait Loci Originating from Solanum sparsipilum Act Independently on the Sex Ratio of Globodera pallida and Together for Developing a Necrotic Reaction

Bernard Caromel; Didier Mugniéry; Marie-Claire Kerlan; et al. Molecular Plant-Microbe Interactions 2005. doi:10.1094/mpmi-18-1186

Other claims from this paper (8)

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Scaffold ordering decreased the number of faba bean scaffolds by 45

Taxon: faba beanVicia fabat0
Outcome: number of scaffoldse1
Direction: decreasee1
Value: 45e1

Verbatim

t0
“faba bean”
✓ located verbatim in the source · title, characters 13–22

e1
“Two high-density genetic maps were used to conduct the scaffold ordering and orientation of faba bean, culminating in an increased length (i.e., 14.28 Mbp) of chromosomes and a decrease in the number of scaffolds by 45”
✓ located verbatim in the source · abstract, characters 223–441

Title

High-quality faba bean reference transcripts generated using PacBio and Illumina RNA-seq data

Na Zhao; Enqiang Zhou; Yamei Miao; et al. Scientific Data 2024. doi:10.1038/s41597-024-03204-4

Other claims from this paper (9)

Method / resource Scaffold ordering with two high-density genetic maps increased faba bean chromosome length to 14.28 Mbp
Method / resource PacBio and Illumina RNA-seq datasets from 37 samples allowed identification and correction of 121,606 transcripts
Method / resource RNA-seq data predicted 15,640 alternative splicing events in faba bean
Method / resource RNA-seq data predicted 2,148 lncRNAs in faba bean
Method / resource RNA-seq data predicted 1,752 fusion transcripts in faba bean
Method / resource Compared with the reference genome, 38,850 new faba bean genes were identified
Method / resource Compared with the reference genome, 56,188 new faba bean transcripts were identified
Method / resource The integrated faba bean transcriptome sequence contains 103,267 transcripts
Method / resource The integrated faba bean transcriptome is derived from 54,753 uni-genes

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Integrating GRAS-Di and GoldenGate markers decreased average intermarker genetic distance in four RIL populations.

Taxon: riceOryza sativat0
Outcome: average genetic distance between markerse0
Direction: decreasee0
Comparator: both linkage mapse0

Verbatim

e0
“the average genetic distance between markers showed a clear decrease in the four RIL populations when we integrated markers of both linkage maps.”
✓ located verbatim in the source · abstract, characters 1338–1483

t0
“Japanese Rice japonica Recombinant Inbred Lines”
✓ located verbatim in the source · title, characters 31–78

Title

High-Density Linkage Maps from Japanese Rice japonica Recombinant Inbred Lines Using Genotyping by Random Amplicon Sequencing-Direct (GRAS-Di)

Rym Fekih; Yohei Ishimaru; Satoshi Okada; et al. Plants 2023. doi:10.3390/plants12040929

Other claims from this paper (11)

Method / resource GRAS-Di generated 438.7 Mbp of called bases for RIL71.
Method / resource GRAS-Di generated 440 Mbp of called bases for RIL98.
Method / resource GRAS-Di generated 403.1 Mbp of called bases for RIL16.
Method / resource GRAS-Di generated 392 Mbp of called bases for RIL91.
Method / resource Genotyping identified 1050 markers in RIL71.
Method / resource Genotyping identified 1285 markers in RIL98.
Method / resource Genotyping identified 1708 markers in RIL16.
Method / resource Genotyping identified 1704 markers in RIL91.
Method / resource The markers localized five heading-date QTLs on chromosomes 3, 6 and 7 corresponding to Hd1, Hd2, Hd6, Hd16 and Hd17.
Method / resource GRAS-Di provided low-cost efficient genotyping for closely related Japanese rice cultivars.
Method / resource GRAS-Di enabled generation of a high-density linkage map.

Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

CAB transcripts decreased in abundance during grapevine leaf senescence.

Taxon: Vitis viniferaVitis viniferae0
Material: 'Pinot noir'e0
Organ / stage: leaf senescencee3
Gene: chlorophyll a/b binding (CAB) genese2
Outcome: CAB transcriptse1
Direction: decreasee1

Verbatim

e0
“Vitis vinifera 'Pinot noir' leaves 7, 88 and 131 days-old”
✓ located verbatim in the source · abstract, characters 534–591

e1
“While CAB transcripts decrease in their abundance, cysteine-proteinases are activated”
✓ located verbatim in the source · abstract, characters 853–938

e2
“chlorophyll a/b binding (CAB) genes and the cysteine-proteinases genes”
✓ located verbatim in the source · abstract, characters 781–851

e3
“At this stage of leaf senescence”
✓ located verbatim in the source · abstract, characters 702–734

Title

GENE EXPRESSION PROFILING DURING GRAPE LEAF DEVELOPMENT AND SENESCENCE BY HIGH DENSITY FILTERS

C. Moser; M. Pindo; M. Bertamini; et al. Acta Horticulturae 2005. doi:10.17660/actahortic.2005.689.52

Other claims from this paper (2)

Association Cysteine-proteinase genes were activated during grapevine leaf senescence.
Method / resource A cDNA macroarray of about 2300 putative unigenes was constructed for grapevine leaves.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Nodulation module activation appeared linked to reduced NodD2 expression.

Taxon: SoybeanGlycine maxt0
Interactor: Bradyrhizobium diazoefficiensBradyrhizobium diazoefficienst0symbiont
Gene: NodD2e0
Outcome: expression of NodD2e0
Direction: decreasee0
Qualifier: appeared to be linkede0

Verbatim

e0
“The former appeared to be linked to a significant decrease in the expression of NodD2, a key cell-density-dependent repressor of nodulation genes”
✓ located verbatim in the source · abstract, characters 1006–1151

t0
“Soybean-mediated suppression of BjaI/BjaR 1 quorum sensing in Bradyrhizobium diazoefficiens”
✓ located verbatim in the source · title, characters 0–91

Title

Soybean-mediated suppression of BjaI/BjaR ₁ quorum sensing in Bradyrhizobium diazoefficiens impacts symbiotic nitrogen fixation

Fang Han; Huiquan Li; Ermeng Lyu; et al. Applied and Environmental Microbiology 2024. doi:10.1128/aem.01374-23

Other claims from this paper (9)

Observation BjaI/BjaR1 system activity was lower in nodule bacteria than free-living cells.
Intervention effect The ΔbjaR 1 strain enhanced nodulation induction.
Intervention effect The ΔbjaR 1 strain enhanced nitrogen fixation ability.
Intervention effect The ΔbjaR 1 strain compromised soybean plant dry weight.
Intervention effect BjaR 1 inactivation activated genomic modules associated with nodulation.
Intervention effect BjaR 1 inactivation inhibited genomic modules associated with nitrogen metabolism.
Mechanism The nitrogen metabolism change made bacterial growth insensitive to environmental nitrogen.
Mechanism The nitrogen metabolism change made bacterial nitrogen fixation insensitive to environmental nitrogen.
Association BjaR 1 positively affected transcription of central intermediate metabolism genes in nodules.

Mechanismobservedoriginal resultmeasured

Claim · model-written summary

ZmELF3.1 interacts with RA2 and ZmELF4.2 to form tri-protein complexes that enhance RA2 binding to the TSH4 promoter and decrease tassel branch number in maize.

Taxon: maizeZea mayse0
Gene: ZmELF3.1e3
Outcome: decreased TBNe3
Qualifier: tri-protein complexese3

Verbatim

e0
“Tassel branch number (TBN) is a key agronomic trait for adapting to high-density planting and grain yield in maize”
✓ located verbatim in the source · abstract, characters 0–114

e3
“ZmELF3.1 directly interacts with both RA2 and ZmELF4.2 to form tri-protein complexes that further enhance the binding of RA2 to the promoter of TSH4, leading to suppressed TSH4 expression and consequently decreased TBN”
✓ located verbatim in the source · abstract, characters 813–1031

Title

ZmELF3.1 integrates the RA2‐TSH4 module to repress maize tassel branching

Yurong Xie; Yongping Zhao; Lihong Chen; et al. New Phytologist 2023. doi:10.1111/nph.19329

Other claims from this paper (3)

Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

The gem mutant had reduced expression of seven root hair genes.

Material: gem mutante0
Gene: RHD6, AXR2, AUX1, AXR1, ETR1, CTR1, and EIN2e0
Outcome: expressione0
Direction: reducede0

Not reportedTaxon

Verbatim

e0
“By contrast, gem mutant plants displayed a decrease in root hair density and length with reduced expression of RHD6, AXR2, AUX1, AXR1, ETR1, CTR1, and EIN2.”
✓ located verbatim in the source · abstract, characters 1106–1262

Title

The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis

Ramin Bahmani; Dong G. Kim; Jin A. Kim; et al. Frontiers in Plant Science 2016. doi:10.3389/fpls.2016.01763

Other claims from this paper (9)

Intervention effect Cadmium and arsenic increased root hair density and length.
Observation Cadmium and arsenic downregulated TTG1 and GL2.
Observation Cadmium and arsenic upregulated GEM.
Observation Cadmium and arsenic increased root hair initiation gene transcripts.
Observation Cadmium and arsenic increased root hair elongation gene transcripts except CTR1.
Observation DR5 expression was higher in the root tip.
Intervention effect TTG1 knockdown increased root hair density.
Intervention effect TTG1 knockdown decreased root hair length.
Observation The gem mutant had reduced root hair density and length.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Several candidate genes potentially related to multiple-spikelet degeneration, single-floret spikelet increase and reduced seed set were identified in the mapped region.

Taxon: barleyHordeum vulgaree0
Gene: candidate genese0
Outcome: multiple-spikelet degeneration, single-floret spikelet increase and seed set rate decreasee0
Qualifier: may be responsiblee0

Verbatim

e0
“Several candidate genes that may be responsible for barley multiple-spikelet degeneration, single-floret spikelet increase and seed set rate decrease were identified in the region.”
✓ located verbatim in the source · abstract, characters 1080–1260

Title

Construction of a high-density genetic map and fine mapping of a candidate gene locus for a novel branched-spike mutant in barley

Weibin Wang; Junyu He; Shengwei Chen; et al. PLoS ONE 2020. doi:10.1371/journal.pone.0227617

Other claims from this paper (4)

“decrease in density”

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