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Associationobservedoriginal resultmeasured

Claim · model-written summary

Presence or absence changes in TF expression were more likely associated with target gene expression changes than quantitative TF expression changes.

Taxon
MaizeZea mayst0
Gene
TFe0
Outcome
changes in target gene expressione0
Direction
more likelye0
Comparator
quantitative changes in TF gene expressione0

Verbatim

e0

“presence/absence changes rather than quantitative changes in TF gene expression are more likely associated with changes in target gene expression”

✓ located verbatim in the source · abstract, characters 905–1050
t0

“Maize”

✓ located verbatim in the source · title, characters 33–38

Title

Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions

Peng Zhou; Zhi Li; Erika Magnusson; et al. The Plant Cell 2020. doi:10.1105/tpc.20.00080

Other claims from this paper (4)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Polyphenol changes aligned with changes in gene expression.

Taxon
kiwifruitActinidia deliciosat0
Outcome
changes in gene expressione0
Qualifier
aligned withe0

Not reportedOrgan / stageDirection

Verbatim

e0

“which aligned with observed changes in gene expression”

✓ located verbatim in the source · abstract, characters 1616–1670
t0

“kiwifruit”

✓ located verbatim in the source · title, characters 49–58

Title

Uncovering the hidden dynamics of pollination in kiwifruit maturity and ripening

Marios Georgios Kollaros; Michail Michailidis; Alexandra Poulouktsi; et al. Postharvest Biology and Technology 2025. doi:10.1016/j.postharvbio.2025.113763

Other claims from this paper (12)
Mechanismobservedoriginal resultmeasured

Claim · model-written summary

Summer temperature and photoperiod changes trigger changes in gene expression.

Taxon
Moricandia arvensisMoricandia arvensise1
Outcome
changes in gene expressione0
Qualifier
Changes in temperature and photoperiod in summere0

Verbatim

e0

“Changes in temperature and photoperiod in summer trigger changes in gene expression”

✓ located verbatim in the source · abstract, characters 542–625
e1

“Moricandia arvensis flowers”

✓ located verbatim in the source · abstract, characters 209–236

Title

Within-individual phenotypic plasticity in flowers fosters pollination niche shift

José M. Gómez; Francisco Perfectti; Cristina Armas; et al. Nature Communications 2020. doi:10.1038/s41467-020-17875-1

Other claims from this paper (5)
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Gene expression changes appear important to drought-related flowering-time changes.

Taxon
tropical maizet0
Treatment
droughte0
Gene
gene expressione0
Outcome
changes in flowering timee0

Verbatim

e0

“Changes in gene expression appear to play an important role in changes in flowering time under drought”

✓ located verbatim in the source · abstract, characters 943–1045
t0

“tropical maize”

✓ located after whitespace/quote normalisation · title, characters 103–117

Title

RNA-Seq Analysis of Gene Expression Changes Related to Delay of Flowering Time under Drought Stress in Tropical Maize

Kyung-Hee Kim; Kitae Song; Jeong-Min Park; et al. Applied Sciences 2021. doi:10.3390/app11094273

Other claims from this paper (2)
Observationauthor interpretationreview summarybasis n/a

Claim · model-written summary

The review describes heritable changes in plant gene expression without DNA sequence changes.

Taxon
Plante0
Outcome
heritable changes in gene expressione0

Not reportedGene

Verbatim

e0

“Plant epigenetics is the study of heritable changes in gene expression that do not involve changes to the DNA sequence itself.”

✓ located verbatim in the source · abstract, characters 0–126

Title

Plant epigenetics: What it is and role in herbal field

Kuntal Das PhytoTalks 2025. doi:10.21276/pt.2025.v2.i2.1

Other claims from this paper (2)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Only a small proportion of accessibility changes was associated with nearby gene expression changes.

Taxon
Arabidopsis arenosaArabidopsis arenosat0
Gene
nearby genese0
Outcome
expression changes in nearby genese0
Qualifier
small proportione0

Not reportedDirection

Verbatim

e0

“only a small proportion is associated with expression changes in nearby genes.”

✓ located verbatim in the source · abstract, characters 1112–1190
t0

“Arabidopsis arenosa”

✓ located verbatim in the source · title, characters 92–111

Title

Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa

Thanvi Srikant; Adrián Gonzalo; Kirsten Bomblies Molecular Biology and Evolution 2024. doi:10.1093/molbev/msae213

Other claims from this paper (8)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Altered StTINY3 expression was associated with starch resynthesis gene expression changes.

Gene
StTINY3e0
Outcome
expression changes in starch resynthesis-related genese0

Not reportedDirection

Verbatim

e0

“altering StTINY3 expression was associated with expression changes in starch resynthesis-related genes”

✓ located verbatim in the source · abstract, characters 701–803
t0

“potato”

✓ located verbatim in the source · title, characters 138–144

Title

The transcription factor StTINY3 enhances cold-induced sweetening resistance by coordinating starch resynthesis and sucrose hydrolysis in potato

Weiling Shi; Qiuqin Ma; Wang Yin; et al. Journal of Experimental Botany 2022. doi:10.1093/jxb/erac171

Other claims from this paper (10)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Differential methylation of lncRNAs tended to coincide with expression changes.

Taxon
lotusLotust0
Gene
lncRNAse0
Outcome
expression changese0

Not reportedDirection

Verbatim

e0

“differential methylation of lncRNAs also tends to have expression changes”

✓ located verbatim in the source · abstract, characters 1268–1341
t0

“lotus”

✓ located verbatim in the source · title, characters 100–105

Title

Expression rewiring and methylation of non-coding RNAs involved in rhizome phenotypic variations of lotus ecotypes

Yue Zhang; Hui Li; Xingyu Yang; et al. Computational and Structural Biotechnology Journal 2022. doi:10.1016/j.csbj.2022.06.001

Other claims from this paper (7)
Associationobservedoriginal resultmeasured

Claim · model-written summary

TaHAT expression responded to temperature changes.

Taxon
Triticum aestivumTriticum aestivumt0
Treatment
temperature changese0
Outcome
TaHATs in expressione0

Not reportedDirection

Verbatim

t0

“Triticum aestivum”

✓ located verbatim in the source · title, characters 75–92
e0

“The TaHATs in expression also responded to temperature changes”

✓ located verbatim in the source · abstract, characters 1105–1167

Title

Genome-wide identification of the histone acetyltransferase gene family in Triticum aestivum

Shiqi Gao; Linzhi Li; Xiaolei Han; et al. BMC Genomics 2021. doi:10.1186/s12864-020-07348-6

Other claims from this paper (7)
Associationobservedoriginal resultmeasured

Claim · model-written summary

Real-time qPCR showed AaBAM3 expression across seasonal changes was consistent with changes in soluble sugars in Actinidia arguta.

Taxon
Actinidia argutaActinidia argutat0
Gene
AaBAM3e0
Compound
soluble sugarse0
Outcome
AaBAM3 gene expression in seasonal changese0

Not reportedDirection

Verbatim

e0

“The real-time qPCR showed that AaBAM3 gene expression in seasonal changes was consistent with changes of soluble sugars”

✓ located verbatim in the source · abstract, characters 1305–1424
t0

“Actinidia arguta”

✓ located verbatim in the source · title, characters 59–75

Title

Freezing Tolerance and Expression of β-amylase Gene in Two Actinidia arguta Cultivars with Seasonal Changes

Shihang Sun; Jinbao Fang; Miaomiao Lin; et al. Plants 2020. doi:10.3390/plants9040515

Other claims from this paper (8)

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