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Observationobservedoriginal resultmeasured

Claim · model-written summary

Most stress-related and protein-metabolism proteins increased in mock-inoculated and PSV-infected plants.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Interactor
PSVPeanut stunt viruse0pathogen
Outcome
stress-related differently-regulated proteins and those associated with protein metabolisme0
Direction
increasee0

Verbatim

t0

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 445–466
e0

“In mock-inoculated and PSV-infected plants we found an increase in abundance of the majority of stress-related differently-regulated proteins and those associated with protein metabolism”

✓ located verbatim in the source · abstract, characters 1730–1916

Title

Effect of temperature on the pathogenesis, accumulation of viral and satellite RNAs and on plant proteome in peanut stunt virus and satellite RNA-infected plants

Aleksandra Obrępalska-Stęplowska; Jenny Renaut; Sebastien Planchon; et al. Frontiers in Plant Science 2015. doi:10.3389/fpls.2015.00903

Other claims from this paper (7)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Aphids probed less readily on tomato infected with CMV and necrogenic satellite RNAs than with nonnecrogenic satellite RNAs.

Interactor
AphidsAphidomorphae1pest
Second interactor
CMVcucumber mosaic cucumoviruse1pathogen
Outcome
Aphids behaved differently and probed less readilye1
Direction
less readilye1
Comparator
plants containing non-necrogenic satRNAse1

Verbatim

e0

“CMV-infected tomato”

✓ located verbatim in the source · abstract, characters 558–577
e1

“Aphids behaved differently and probed less readily on plants infected with CMV + necrogenic satRNAs compared with plants containing non-necrogenic satRNAs.”

✓ located verbatim in the source · abstract, characters 839–994

Title

Transmissibility of Cucumber mosaic virus by Aphis gossypii Correlates with Viral Accumulation and Is Affected by the Presence of Its Satellite RNA

Fernando Escriu; Keith L. Perry; Fernando García-Arenal Phytopathology 2000. doi:10.1094/phyto.2000.90.10.1068

Other claims from this paper (8)
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

PVY-3303 caused milder symptoms than PVY-3411 in Etola

Material
Etolat0
Treatment
PVY ‐3303e3
Interactor
PVY ‐3303e3pathogen
Outcome
symptomse3
Direction
lowerinferrede3
Comparator
PVY ‐3411e3

Verbatim

t0

“Potato cultivar Etola exhibits hypersensitive resistance to PVY NTN and partial resistance to PVY Z ‐NTN and PVY N‐Wi strains and strain‐specific alterations of certain host miRNAs might correlate with symptom severity”

✓ located verbatim in the source · title, characters 0–218
e3

“The isolate PVY ‐3411 induced severe symptoms and faster systemic viral coat protein and RNA accumulation in the noninoculated upper leaves, whereas PVY ‐3303 caused mild symptoms and delayed viral spreading”

✓ located verbatim in the source · abstract, characters 440–647

Title

Potato cultivar Etola exhibits hypersensitive resistance to PVY NTN and partial resistance to PVY Z ‐NTN and PVY N‐Wi strains and strain‐specific alterations of certain host miRNAs might correlate with symptom severity

Z. Yin; F. Xie; K. Michalak; et al. Plant Pathology 2016. doi:10.1111/ppa.12599

Other claims from this paper (12)
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

PVY-3411 induced more severe symptoms in Etola than PVY-3303

Material
Etolat0
Treatment
isolate PVY ‐3411e3
Interactor
PVY ‐3411e3pathogen
Outcome
symptomse3
Direction
higherinferrede3
Comparator
PVY ‐3303e3

Verbatim

t0

“Potato cultivar Etola exhibits hypersensitive resistance to PVY NTN and partial resistance to PVY Z ‐NTN and PVY N‐Wi strains and strain‐specific alterations of certain host miRNAs might correlate with symptom severity”

✓ located verbatim in the source · title, characters 0–218
e3

“The isolate PVY ‐3411 induced severe symptoms and faster systemic viral coat protein and RNA accumulation in the noninoculated upper leaves, whereas PVY ‐3303 caused mild symptoms and delayed viral spreading”

✓ located verbatim in the source · abstract, characters 440–647

Title

Potato cultivar Etola exhibits hypersensitive resistance to PVY NTN and partial resistance to PVY Z ‐NTN and PVY N‐Wi strains and strain‐specific alterations of certain host miRNAs might correlate with symptom severity

Z. Yin; F. Xie; K. Michalak; et al. Plant Pathology 2016. doi:10.1111/ppa.12599

Other claims from this paper (12)
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Saturating the siRNA-binding capacity of p19 with defective interfering RNAs did not influence miR168-inducing activity.

Taxon
plantsViridiplantaee2
Treatment
defective interfering RNAse4
Gene
p19 VSRe4
Outcome
miR168-inducing activitye4
Qualifier
did not influencee4

Verbatim

e2

“Analysis of the infected plants revealed that the mutant p19-3M VSR is able to induce miR168 level controlling the accumulation of the antiviral AGO1”

✓ located verbatim in the source · abstract, characters 595–744
e4

“saturation of the siRNA-binding capacity of p19 VSR mediated by defective interfering RNAs did not influence the miR168-inducing activity”

✓ located verbatim in the source · abstract, characters 834–971

Title

Independent parallel functions of p19 plant viral suppressor of RNA silencing required for effective suppressor activity

Éva Várallyay; Enikő Oláh; Zoltán Havelda Nucleic Acids Research 2013. doi:10.1093/nar/gkt846

Other claims from this paper (5)
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Most agro-infiltrated plants challenged with ToLCNDV showed an absence of symptoms.

Taxon
tobacco and tomato plantsSolanum lycopersicumNicotiana tabacume0
Treatment
agro-infiltrated plantse1
Interactor
ToLCNDVe1pathogen
Outcome
absence of symptomse1

Not reportedComparatorDirection

Verbatim

e0

“The vector containing fragments of ToLCNDV AC2 and AC4 genes, on agro-infiltration, produced copious quantities of AC2 and AC4 specific siRNA in both tobacco and tomato plants”

✓ located verbatim in the source · abstract, characters 789–964
e1

“On challenge inoculation of the agro-infiltrated plants with ToLCNDV, most plants showed an absence of symptoms and low accumulation of viral DNA”

✓ located verbatim in the source · abstract, characters 966–1111

Title

Development of plants resistant to tomato geminiviruses using artificial trans‐acting small interfering RNA

Archana Singh; Jyoti Taneja; Indranil Dasgupta; et al. Molecular Plant Pathology 2014. doi:10.1111/mpp.12229

Other claims from this paper (5)
Observationobservedoriginal resultmeasured

Claim · model-written summary

VPg-Pro and eIF(iso)4E BiFC fluorescence occurred throughout the nucleus and preferentially accumulated in subnuclear structures.

Taxon
Nicotiana benthamianaNicotiana benthamianae1
Interactor
Turnip mosaic virusTurnip mosaic viruse2pathogen
Gene
VPg-Pro and eIF(iso)4Ee0
Outcome
reconstituted green fluorescencee0
Qualifier
throughout the nucleus, with a preferential accumulation in subnuclear structurese0

Not reportedDirection

Verbatim

e0

“reconstituted green fluorescence was observed throughout the nucleus, with a preferential accumulation in subnuclear structures when the GFP split fragments were fused to VPg-Pro and eIF(iso)4E”

✓ located verbatim in the source · abstract, characters 950–1143
e1

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 597–618
e2

“The RNA genome of Turnip mosaic virus”

✓ located verbatim in the source · abstract, characters 0–37

Title

Visualization of the Interaction between the Precursors of VPg, the Viral Protein Linked to the Genome ofTurnip Mosaic Virus, and the Translation Eukaryotic Initiation Factor iso 4E In Planta

Chantal Beauchemin; Nathalie Boutet; Jean-François Laliberté Journal of Virology 2006. doi:10.1128/jvi.01277-06

Other claims from this paper (6)
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

BPMV increased a virus-activated siRNA targeting defense-related NLR genes.

Taxon
soybeanGlycine maxe0
Treatment
BPMVe1
Interactor
BPMVBean pod mottle viruse1pathogen
Gene
nucleotide-binding leucine-rich repeat receptor (NLR) genese1
Outcome
virus-activated siRNAe1
Direction
increasede1

Not reportedComparator

Verbatim

e0

“In soybean (Glycine max)”

✓ located verbatim in the source · abstract, characters 272–296
e1

“BPMV reduced the accumulation of virus-related siRNAs and increased the virus-activated siRNA that targeted several defense-related nucleotide-binding leucine-rich repeat receptor (NLR) genes through the action of the suppression of RNA-silencing activities encoded in its large and small coat protein subunits.”

✓ located verbatim in the source · abstract, characters 1138–1449

Title

Viral synergism suppresses R gene-mediated resistance by impairing downstream defense mechanisms in soybean

Mazen Alazem; John Bwalya; Pai Hsuan; et al. PLANT PHYSIOLOGY 2023. doi:10.1093/plphys/kiad255

Other claims from this paper (6)
Observationobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Photosynthesis and carbohydrate metabolism proteins were significantly less abundant at 27°C than at 21°C.

Taxon
Nicotiana benthamianaNicotiana benthamianat0
Outcome
identified proteins participating in photosynthesis and carbohydrate metabolisme0
Direction
drope0
Comparator
plants maintained at 21°Ce0
Setting
27°Ce0

Verbatim

t0

“Nicotiana benthamiana”

✓ located verbatim in the source · abstract, characters 445–466
e0

“In all studied plants grown at 27°C, we observed a significant drop in the identified proteins participating in photosynthesis and carbohydrate metabolism at the proteome level, in comparison to plants maintained at 21°C”

✓ located verbatim in the source · abstract, characters 1210–1430

Title

Effect of temperature on the pathogenesis, accumulation of viral and satellite RNAs and on plant proteome in peanut stunt virus and satellite RNA-infected plants

Aleksandra Obrępalska-Stęplowska; Jenny Renaut; Sebastien Planchon; et al. Frontiers in Plant Science 2015. doi:10.3389/fpls.2015.00903

Other claims from this paper (7)
Observationobservedoriginal resultmeasured

Claim · model-written summary

Five cassava-infecting geminivirus species triggered PTGS and produced two classes of virus-specific siRNAs in tobacco and cassava.

Taxon
tobacco (Nicotiana benthamiana) and cassava (Manihot esculenta, Crantz)Manihot esculentaNicotiana benthamianae0
Interactor
cassava-infecting geminivirusese0pathogen
Outcome
triggering PTGSe0
Value
21 to 26 nucleotidese0

Verbatim

e0

“five distinct species of cassava-infecting geminiviruses were capable of triggering PTGS by producing two classes of virus-specific short interfering RNAs (siRNAs) of 21 to 26 nucleotides in two plant hosts, tobacco (Nicotiana benthamiana) and cassava (Manihot esculenta, Crantz)”

✓ located verbatim in the source · abstract, characters 332–611

Title

Short Interfering RNA Accumulation Correlates with Host Recovery in DNA Virus-Infected Hosts, and Gene Silencing Targets Specific Viral Sequences

Padmanabhan Chellappan; Ramachandran Vanitharani; Claude M. Fauquet Journal of Virology 2004. doi:10.1128/jvi.78.14.7465-7477.2004

Other claims from this paper (6)

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