Search claims · PlantClaims

Observationobservedoriginal resultmeasured

Claim · model-written summary

protein-coding genes was 89 protein-coding genes.

Taxon: Capsicum annuumCapsicum annuumt0
Outcome: protein-coding genese0
Value: 89 protein-coding genese0

Verbatim

t0
“Capsicum annuum (Solanaceae)”
✓ located verbatim in the source · title, characters 95–123

e0
“89 protein-coding genes (PCGs)”
✓ located verbatim in the source · abstract, characters 466–496

Title

Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Capsicum annuum (Solanaceae)

Mei Bie; Chengdong Han; Xuanyao Wang; et al. Mitochondrial DNA Part B 2020. doi:10.1080/23802359.2019.1710293

Other claims from this paper (14)

Method / resource The assembled chloroplast genome was 156,781 bp.
Observation large single-copy region was 87,367 bp.
Observation small single-copy region was 17,850 bp.
Observation IR regions was 25,782 bp.
Observation transfer RNA genes was 38 transfer RNA genes.
Observation ribosome RNA genes was 8 ribosome RNA genes.
Observation A was 30.8%.
Observation T was 31.5%.
Observation C was 19.1%.
Observation G was 18.6%.
Observation GC content was 37.7%.
Observation AT was 62.3%.
Observation The genome contains 135 genes.
Observation C. annuum clustered with C. galapagoense.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The protein-coding genes measured 89 protein-coding genes.

Taxon: Cinchona officinalisCinchona officinalist0
Outcome: protein-coding genese0
Value: 89 protein-coding genese0

Verbatim

e0
“89 protein-coding genes”
✓ located verbatim in the source · abstract, characters 429–452

t0
“Cinchona officinalis”
✓ located verbatim in the source · title, characters 69–89

Title

The complete chloroplast genome of the national tree of Peru, quina (Cinchona officinalis L., Rubiaceae)

Carlos I. Arbizu; Rubén D. Ferro-Mauricio; Julio C. Chávez-Galarza; et al. Mitochondrial DNA Part B 2021. doi:10.1080/23802359.2021.1969697

Other claims from this paper (10)

Observation The cp genome measured 156,984 bp.
Observation The large single copy (LSC) region measured 83,929 bp.
Observation The small single-copy (SSC) region measured 18,051 bp.
Observation The inverted repeat (IR) regions measured 27,502 bp.
Observation The total GC content measured 37.75%.
Observation The chloroplast genome measured 135 genes.
Observation The tRNA measured 37 tRNA.
Observation The rRNA measured eight rRNA.
Observation The pseudogene measured one pseudogene.
Observation C. officinalis is sister to C. pubescens, and Isertia laevis is sister to that pair.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The Sedum oryzifolium chloroplast genome contains 78 protein-coding genes (58 protein-coding gene species).

Taxon: Sedum oryzifoliumSedum japonicum subsp. oryzifoliume0
Outcome: protein-coding genese1
Value: 78e1
Qualifier: 58 protein-coding gene speciese1

Verbatim

e0
“The complete chloroplast genome sequence of Sedum oryzifolium”
✓ located verbatim in the source · abstract, characters 0–61

e1
“including 78 protein-coding genes (58 protein-coding gene species)”
✓ located verbatim in the source · abstract, characters 517–583

Title

The complete chloroplast genome sequence of medicinal plant, Sedum oryzifolium

Jing Li; Dongling Chen Mitochondrial DNA Part B 2020. doi:10.1080/23802359.2020.1772695

Other claims from this paper (12)

Observationobservedoriginal resultmeasured

Claim · model-written summary

These antisense transcripts might affect 2265 protein coding genes and 39 non-protein-coding genes.

Taxon: Arabidopsis thalianaArabidopsis thalianat0
Outcome: affect 2265 protein coding genes and 39 non-protein-coding genese0
Qualifier: mighte0

Verbatim

e0
“which might affect 2265 protein coding genes and 39 non-protein-coding genes, including long non-coding RNA genes”
✓ located verbatim in the source · abstract, characters 1215–1328

t0
“Arabidopsis thaliana”
✓ located verbatim in the source · title, characters 90–110

Title

Genome-wide characterization of intergenic polyadenylation sites redefines gene spaces in Arabidopsis thaliana

Xiaohui Wu; Yong Zeng; Jinting Guan; et al. BMC Genomics 2015. doi:10.1186/s12864-015-1691-1

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

D. benthamii chloroplast genome: protein-coding genes, 87 protein-coding genes.

Taxon: D. benthamiiDichrocephala benthamiie1
Outcome: protein-coding genese0
Value: 87 protein-coding genese0

Verbatim

e0
“87 protein-coding genes (CDS)”
✓ located verbatim in the source · abstract, characters 581–610

e1
“In this study, we sequenced and analyzed the cp genome of D. benthamii.”
✓ located verbatim in the source · abstract, characters 171–242

Title

Phylogenomic Analysis of Dichrocephala benthamii and Comparative Analysis within Tribe Astereae (Asteraceae)

Hui Chen; Tingyu Li; Xinyu Chen; et al. Genetics and Molecular Biology 2024. doi:10.1590/1678-4685-gmb-2023-0340

Other claims from this paper (12)

Observation D. benthamii chloroplast genome: cp genome, 152,350 bp.
Observation D. benthamii chloroplast genome: inverted repeat regions, 24,982 bp.
Observation D. benthamii chloroplast genome: large single-copy (LSC) region, 84,136 bp.
Observation D. benthamii chloroplast genome: small single-copy (SSC) region, 18,250 bp.
Observation D. benthamii chloroplast genome: GC content of the cp genome, 37.3%.
Observation D. benthamii chloroplast genome: genes, 134 genes.
Observation D. benthamii chloroplast genome: tRNA genes, 38 tRNA genes.
Observation D. benthamii chloroplast genome: rRNA genes, 8 rRNA genes.
Observation D. benthamii chloroplast genome: pseudogene, 1 pseudogene.
Observation IR regions expanded or contracted in D. benthamii and other Astereae.
Observation Analyses identified repeat types and highly variable regions.
Observation Phylogenetic analysis placed D. benthamii as the basal group of Astereae.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The genome contains 84 protein-coding genes.

Outcome: protein-coding genese0
Value: 84 protein-coding genese0

Not reportedTaxon

Verbatim

e0
“84 protein-coding genes”
✓ located verbatim in the source · abstract, characters 369–392

Title

The complete chloroplast genome of Ranunculus Cantoniensis

Tongjian Li; Xiaocong Fu; Huisheng Deng; et al. Mitochondrial DNA Part B 2019. doi:10.1080/23802359.2019.1586483

Other claims from this paper (15)

Method / resource The R. cantoniensis chloroplast genome is 155,119 bp long.
Observation The chloroplast genome has a typical quadripartite structure.
Observation The large single copy region is 84,634 bp.
Observation The small single copy region is 18,879 bp.
Observation The inverted repeat regions are 25,803 bp.
Observation The chloroplast genome contains 131 genes.
Observation The genome contains 37 tRNA genes.
Observation The genome contains 8 rRNA genes.
Observation Fifteen genes have one intron each.
Observation Three genes contain two introns.
Observation Overall chloroplast GC content is 37.9%.
Observation LSC region GC content is 36.0%.
Observation SSC region GC content is 31.1%.
Observation IR region GC content is 43.5%.
Association R. cantoniensis was closely related to R. macranthus.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The genome includes 86 protein-coding genes.

Outcome: protein-coding genese0
Value: 86 protein-coding genese0

Not reportedTaxon

Verbatim

e0
“86 protein-coding genes”
✓ located verbatim in the source · abstract, characters 738–761

Title

The complete chloroplast genome sequence of Plantago ovata

Shaokun Li; Honghua Sun; Kangyu Wang Mitochondrial DNA Part B 2018. doi:10.1080/23802359.2018.1544049

Other claims from this paper (13)

Method / resource The complete Plantago ovata chloroplast genome is 149,739 bp long.
Observation The large single-copy region is 82,592 bp long.
Observation The small single-copy region is 18,365 bp long.
Observation Each inverted repeat region is 24,390 bp long.
Observation The genome harbours 129 functional genes.
Observation The genome includes 35 transfer RNA genes.
Observation The genome includes 8 ribosomal RNA genes.
Observation A accounts for 30.4% of nucleotides.
Observation T accounts for 31.2% of nucleotides.
Observation C accounts for 19.5% of nucleotides.
Observation G accounts for 18.9% of nucleotides.
Observation Total G + C content is 38.4%.
Association Plantago ovata is closely related to Plantago maritima and Plantago media.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The genome contained 85 protein-coding genes.

Outcome: protein-coding genese0
Value: 85 protein-coding genese0

Not reportedTaxon

Verbatim

e0
“85 protein-coding genes”
✓ located verbatim in the source · abstract, characters 454–477

Title

The complete chloroplast genome sequence of Hydrangea luteovenosa (Hydrangeaceae)

Keum Seon Jeong; Jung Sung Kim; Hyuk-Jin Kim; et al. Mitochondrial DNA Part B 2017. doi:10.1080/23802359.2017.1347903

Other claims from this paper (8)

Method / resource The Hydrangea chloroplast genome measured 157,494 bp.
Observation The inverted repeats were 25,126 bp.
Observation The large single-copy region was 86,596 bp.
Observation The small single-copy region was 18,646 bp.
Observation The genome contained 129 genes.
Observation The genome contained 36 tRNA genes.
Observation The genome contained 8 ribosomal RNA genes.
Observation Phylogenetic analysis placed Hydrangea luteovenosa closest to tribe Hydrangeeae.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The genome contains 84 protein-coding genes.

Outcome: protein-coding genese0
Value: 84 protein-coding genese0

Not reportedTaxon

Verbatim

e0
“including 84 protein-coding genes”
✓ located verbatim in the source · abstract, characters 470–503

Title

The complete chloroplast genome sequence of Ziziphus incurva

Yi Wang; Jiabo Hao; Xiaolong Yuan; et al. Mitochondrial DNA Part B 2019. doi:10.1080/23802359.2019.1674706

Other claims from this paper (13)

Method / resource A complete Ziziphus incurva chloroplast genome sequence was reported.
Observation The Ziziphus incurva chloroplast genome is 160,920 bp long.
Observation The large single-copy region is 88,778 bp long.
Observation The small single-copy region is 19,172 bp long.
Observation Each inverted-repeat region is 26,477 bp long.
Observation The genome contains 129 genes.
Observation The genome contains eight ribosomal RNA genes.
Observation The genome contains 37 transfer RNA genes.
Observation Whole-genome GC content is 36.8%.
Observation LSC GC content is 34.6%.
Observation SSC GC content is 30.8%.
Observation IR GC content is 42.7%.
Observation Ziziphus incurva clustered with Z. jujube, Z. mauritiana and Z. spina-christi.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The plastome contained 83 protein-coding genes.

Outcome: protein-coding genese0
Value: 83 protein-coding genese0

Not reportedTaxon

Verbatim

e0
“83 protein-coding genes”
✓ located verbatim in the source · abstract, characters 544–567

Title

The complete plastome of Acalypha australis (Euphorbiaceae) and its phylogenetic analysis

Hongqin Li; Changhao Ma; Liqiang Wang Mitochondrial DNA Part B 2024. doi:10.1080/23802359.2023.2294891

Other claims from this paper (10)

Method / resource The Acalypha australis plastome was assembled and characterized.
Observation The plastome length was 168,885 bp.
Observation The large single-copy region measured 94,576 bp.
Observation The small single-copy region measured 19,715 bp.
Observation Each of two inverted repeats measured 27,297 bp.
Observation Overall plastome GC content was 34.9%.
Observation The plastome contained 127 genes.
Observation The plastome contained 36 tRNA genes.
Observation The plastome contained eight rRNA genes.
Observation A. australis and A. hispida formed a monophyletic sister clade.

“protein-coding”

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