By interacting organism › Bacteria › Pseudonocardiaceae

Observationobservedoriginal resultmeasured

Claim · model-written summary

The effector protein SyCD1 from Saccharothrix yanglingensis Hhs.015 enters apple leaf cells.

Taxon: AppleMalus domesticat0
Organ / stage: leaf cellse0
Interactor: Saccharothrix yanglingensis Hhs.015Saccharothrix longispora subsp. yanglingensise0biocontrol_agent
Gene: SyCD1e0
Outcome: enters apple ( Malus domestica ) leaf cellse0

Verbatim

t0
“Apple”
✓ located verbatim in the source · title, characters 108–113

e0
“the effector protein SyCD1 from Saccharothrix yanglingensis Hhs.015 enters apple ( Malus domestica ) leaf cells and reduces Cu 2+ levels”
✓ located verbatim in the source · abstract, characters 239–375

Title

Copper‐Regulated Modulation of the MdbZIP11–MdHAT5 Transcriptional Module Enhances ABA‐Mediated Immunity in Apple

Hongjia Yu; Zhouzheng Yang; Hanqi Zhou; et al. Molecular Plant Pathology 2026. doi:10.1111/mpp.70297

Other claims from this paper (10)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Saccharopolyspora, Pediococcus and Clostridium enhanced fatty acid and amino acid accumulation in Zaopei.

Taxon: glutinous ricet0
Interactor: Saccharopolyspora , Pediococcus , and ClostridiumPediococcusClostridiumSaccharopolysporae2other
Outcome: fatty acid and amino acid accumulatione2
Direction: enhancede2
Qualifier: in Zaopeie2

Verbatim

t0
“glutinous rice varieties shape Baijiu flavor”
✓ located verbatim in the source · title, characters 20–64

e2
“Functional genera such as Saccharopolyspora , Pediococcus , and Clostridium enhanced fatty acid and amino acid accumulation in Zaopei and increased ethyl acetate, 4-vinylphenol, and dimethyl trisulfide in Baijiu”
✓ located verbatim in the source · abstract, characters 620–831

Title

Multi-omics reveals glutinous rice varieties shape Baijiu flavor via microbial and metabolic modulation

Jia Zeng; Lijuan Gong; Shuai Qin; et al. Frontiers in Microbiology 2026. doi:10.3389/fmicb.2025.1721127

Other claims from this paper (2)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Saccharopolyspora, Pediococcus and Clostridium increased ethyl acetate, 4-vinylphenol and dimethyl trisulfide in Baijiu.

Taxon: glutinous ricet0
Interactor: Saccharopolyspora , Pediococcus , and ClostridiumPediococcusClostridiumSaccharopolysporae2other
Outcome: ethyl acetate, 4-vinylphenol, and dimethyl trisulfide in Baijiue2
Direction: increasede2

Verbatim

t0
“glutinous rice varieties shape Baijiu flavor”
✓ located verbatim in the source · title, characters 20–64

e2
“Functional genera such as Saccharopolyspora , Pediococcus , and Clostridium enhanced fatty acid and amino acid accumulation in Zaopei and increased ethyl acetate, 4-vinylphenol, and dimethyl trisulfide in Baijiu”
✓ located verbatim in the source · abstract, characters 620–831

Title

Multi-omics reveals glutinous rice varieties shape Baijiu flavor via microbial and metabolic modulation

Jia Zeng; Lijuan Gong; Shuai Qin; et al. Frontiers in Microbiology 2026. doi:10.3389/fmicb.2025.1721127

Other claims from this paper (2)

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Nitrogen reduction enriched the beneficial genera Arthrobacter and Amycolatopsis in tobacco rhizosphere.

Taxon: tobaccoNicotiana tabacume0
Treatment: nitrogen reductione1
Interactor: Arthrobacter and AmycolatopsisArthrobacterAmycolatopsise2other
Outcome: Arthrobacter and Amycolatopsise2
Direction: enrichede2

Not reportedComparator

Verbatim

e0
“Bacterial wilt caused by Ralstonia solanacearum is a devastating soil-borne disease that seriously threatens tobacco yield and quality worldwide”
✓ located verbatim in the source · abstract, characters 13–157

e1
“nitrogen reduction reshaped community structure”
✓ located verbatim in the source · abstract, characters 1305–1352

e2
“enriched beneficial genera such as Arthrobacter and Amycolatopsis”
✓ located verbatim in the source · abstract, characters 1382–1447

Title

Nitrogen reduction in basal fertilization enhances soil physicochemical properties and reshapes microbial community structure to alleviate tobacco bacterial wilt

Chaojun Shi; Xiufang Yang; Zhengfeng Gao; et al. Frontiers in Microbiology 2026. doi:10.3389/fmicb.2025.1704525

Other claims from this paper (11)

Intervention effect Moderate nitrogen reduction significantly decreased the rhizosphere abundance of R. solanacearum in tobacco.
Intervention effect Moderate nitrogen reduction markedly reduced tobacco bacterial wilt incidence and severity.
Association With decreasing nitrogen input, soil pH increased in tobacco fields.
Intervention effect Moderate nitrogen reduction significantly enhanced available nitrogen, phosphorus and potassium in tobacco rhizosphere soil.
Intervention effect Moderate nitrogen reduction significantly enhanced microbial biomass carbon and phosphorus in tobacco rhizosphere soil.
Intervention effect Moderate nitrogen reduction optimized the activities of urease, acid phosphatase and nitrate reductase in tobacco rhizosphere soil.
Intervention effect Moderate nitrogen reduction optimized nitrite reductase activity in tobacco rhizosphere soil.
Intervention effect Nitrogen reduction reshaped the microbial community structure in tobacco rhizosphere.
Intervention effect Nitrogen reduction increased the α-diversity of the tobacco rhizosphere microbial community.
Association Soil pH, microbial biomass carbon, acid phosphatase activity and soil organic matter were the primary drivers of microbial community shifts in tobacco soil.
Intervention effect Moderate reduction of basal nitrogen fertilization suppressed tobacco bacterial wilt.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The combined Kibdelosporangium sp. and chitosan nanoparticle application increased fresh weight of Nebraska bean by up to 84.7%.

Taxon: Phaseolus vulgaris L.Phaseolus vulgarise0
Material: Nebraskae1
Treatment: combined application of Kibdelosporangium sp. and CSNPse1
Interactor: Kibdelosporangium sp.Kibdelosporangiume1other
Outcome: fresh weighte1
Direction: increasinge1
Value: 84.7%e1
Qualifier: up toe1

Not reportedComparator

Verbatim

e0
“in two Phaseolus vulgaris L. cultivars: the sensitive 'Nebraska' and the tolerant 'Giza 6'”
✓ located verbatim in the source · abstract, characters 372–462

e1
“However, the combined application of Kibdelosporangium sp. and CSNPs alleviated these stress effects, increasing fresh weight up to 84.7% and reducing Hg accumulation from 86.58 to 48.23 μg g -1 DW in Nebraska”
✓ located verbatim in the source · abstract, characters 632–841

Title

Kibdelosporangium sp. and chitosan nanoparticles differentially mitigated mercury stress in two Phaseolus vulgaris L. cultivars: Improved photosynthetic efficiency, primary metabolism and redox homeostasis

Shereen Magdy Korany; Marwa Yousry A. Mohamed; Hana Sonbol; et al. Plant Physiology and Biochemistry 2026. doi:10.1016/j.plaphy.2026.111484

Other claims from this paper (16)

Intervention effect Hg exposure reduced fresh weight of Nebraska bean by up to 57%.
Intervention effect Hg exposure reduced photosynthetic rate of Nebraska bean by up to 65%.
Intervention effect The combined Kibdelosporangium sp. and chitosan nanoparticle application reduced Hg accumulation in Nebraska bean from 86.58 to 48.23 μg g -1 DW.
Intervention effect The combined treatment reduced H2O2 accumulation and lipid peroxidation in Nebraska bean by about 38–45% relative to Hg-only treatment.
Intervention effect Hg stress increased antioxidant defences in Nebraska bean by 34–111%.
Intervention effect Hg stress increased antioxidant defences in Giza 6 bean by 52–160%.
Intervention effect Combined treatments further increased the antioxidant defence response relative to Hg stress.
Intervention effect Hg significantly increased total soluble sugars in Nebraska bean by 85%.
Intervention effect Hg significantly increased total soluble sugars in Giza 6 bean by 100%.
Intervention effect Hg increased proline in Nebraska bean by 33%.
Intervention effect Combined treatment normalized sugar levels in Hg-stressed bean, especially in Giza 6.
Intervention effect The combined intervention maintained high tocopherol levels in bean under Hg stress.
Observation The sensitive Nebraska bean cultivar showed greater recovery.
Intervention effect The combined application restored photosynthesis in Hg-stressed bean.
Intervention effect The combined application increased the bioavailability of primary sugars in Hg-stressed bean.
Mechanism Primary sugars are proposed to serve as carbon skeletons and energy precursors for biosynthesis of organic, amino and fatty acids in bean.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The combined Kibdelosporangium sp. and chitosan nanoparticle application reduced Hg accumulation in Nebraska bean from 86.58 to 48.23 μg g -1 DW.

Taxon: Phaseolus vulgaris L.Phaseolus vulgarise0
Material: Nebraskae1
Treatment: combined application of Kibdelosporangium sp. and CSNPse1
Interactor: Kibdelosporangium sp.Kibdelosporangiume1other
Outcome: Hg accumulatione1
Direction: reducinge1
Value: from 86.58 to 48.23 μg g -1 DWe1

Not reportedComparator

Verbatim

e0
“in two Phaseolus vulgaris L. cultivars: the sensitive 'Nebraska' and the tolerant 'Giza 6'”
✓ located verbatim in the source · abstract, characters 372–462

e1
“However, the combined application of Kibdelosporangium sp. and CSNPs alleviated these stress effects, increasing fresh weight up to 84.7% and reducing Hg accumulation from 86.58 to 48.23 μg g -1 DW in Nebraska”
✓ located verbatim in the source · abstract, characters 632–841

Title

Kibdelosporangium sp. and chitosan nanoparticles differentially mitigated mercury stress in two Phaseolus vulgaris L. cultivars: Improved photosynthetic efficiency, primary metabolism and redox homeostasis

Shereen Magdy Korany; Marwa Yousry A. Mohamed; Hana Sonbol; et al. Plant Physiology and Biochemistry 2026. doi:10.1016/j.plaphy.2026.111484

Other claims from this paper (16)

Intervention effect Hg exposure reduced fresh weight of Nebraska bean by up to 57%.
Intervention effect Hg exposure reduced photosynthetic rate of Nebraska bean by up to 65%.
Intervention effect The combined Kibdelosporangium sp. and chitosan nanoparticle application increased fresh weight of Nebraska bean by up to 84.7%.
Intervention effect The combined treatment reduced H2O2 accumulation and lipid peroxidation in Nebraska bean by about 38–45% relative to Hg-only treatment.
Intervention effect Hg stress increased antioxidant defences in Nebraska bean by 34–111%.
Intervention effect Hg stress increased antioxidant defences in Giza 6 bean by 52–160%.
Intervention effect Combined treatments further increased the antioxidant defence response relative to Hg stress.
Intervention effect Hg significantly increased total soluble sugars in Nebraska bean by 85%.
Intervention effect Hg significantly increased total soluble sugars in Giza 6 bean by 100%.
Intervention effect Hg increased proline in Nebraska bean by 33%.
Intervention effect Combined treatment normalized sugar levels in Hg-stressed bean, especially in Giza 6.
Intervention effect The combined intervention maintained high tocopherol levels in bean under Hg stress.
Observation The sensitive Nebraska bean cultivar showed greater recovery.
Intervention effect The combined application restored photosynthesis in Hg-stressed bean.
Intervention effect The combined application increased the bioavailability of primary sugars in Hg-stressed bean.
Mechanism Primary sugars are proposed to serve as carbon skeletons and energy precursors for biosynthesis of organic, amino and fatty acids in bean.

Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

Lechevalieria was linked to higher alkaline phosphatase activity under BC–RI.

Taxon: Arundo donaxArundo donaxt0
Treatment: BC–RI treatmente0
Interactor: LechevalieriaLentzeae0symbiont
Outcome: alkaline phosphatase (ALP) activitye0

Verbatim

e0
“Rhizosphere network analysis identified key bacterial genera, with Longimicrobiaceae driving soil organic carbon accumulation in the BC–FM treatment and Lechevalieria enhancing alkaline phosphatase (ALP) activity in the BC–RI treatment.”
✓ located verbatim in the source · abstract, characters 958–1194

t0
“Arundo donax”
✓ located verbatim in the source · title, characters 37–49

Title

Biochar-loaded AM fungi coupled with Arundo donax enable targeted red mud remediation via valency—specific metal detoxification and soil function recovery

Xiaohui Wang; Yingqiang Sun; Danjuan Zeng; et al. Biochar 2026. doi:10.1007/s42773-025-00568-7

Other claims from this paper (12)

Intervention effect BC–FM enhanced plant antioxidant system.
Intervention effect BC–FM enhanced photosynthetic capacity.
Intervention effect BC–FM reducing content of exchangeable arsenic (As).
Intervention effect BC–FM reducing soil pH.
Intervention effect BC–RI increased plant biomass.
Intervention effect BC–RI increased soil microbial α–diversity.
Intervention effect BC–RI reducing contents of soil lead (Pb).
Intervention effect BC–RI reducing sodium ions (Na⁺).
Intervention effect BC–RI enhancing alkaline phosphatase activity.
Mechanism Longimicrobiaceae was linked to soil organic carbon accumulation under BC–FM.
Recommendation Apply BC–RI in Pb–dominated areas for red mud remediation.
Recommendation Apply BC–FM in As–contaminated areas for red mud remediation.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Pseudonocardia abundance was positively correlated with soil total nitrogen and ammonium nitrogen.

Taxon: Populus euphraticaPopulus euphraticae1
Interactor: PseudonocardiaPseudonocardiae0other
Outcome: soil total nitrogen (TN) and ammonium nitrogen (NH4+-N)e0
Direction: positive correlatione0

Verbatim

e0
“relative abundance of the key bacterial genus Pseudonocardia shows a significant positive correlation with soil total nitrogen (TN) and ammonium nitrogen (NH4+-N) (p < 0.05)”
✓ located verbatim in the source · abstract, characters 1723–1896

e1
“Populus euphratica (P. euphratica)”
✓ located verbatim in the source · abstract, characters 0–34

Title

The Impact of Groundwater Depth on the Microbial Network and Key Microbial Communities in the Rhizosphere of Populus euphratica

Xiaolin Chen; Hailian Liang; Fei Chen; et al. Forests 2026. doi:10.3390/f17030314

Other claims from this paper (8)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The effector SyCD1 was identified from S. yanglingensis Hhs.015.

Taxon: appleMalus domesticae0
Interactor: S. yanglingensisSaccharothrix longispora subsp. yanglingensise1biocontrol_agent
Gene: SyCD1e1
Outcome: identified from the Hhs.015 straine1

Verbatim

e0
“apple (Malus domestica)”
✓ located verbatim in the source · abstract, characters 183–206

e1
“the effector S. yanglingensis cupredoxin protein (SyCD1) was identified from the Hhs.015 strain.”
✓ located verbatim in the source · abstract, characters 457–553

Title

The MdSP1-MdANK immune module activated by effector SyCD1 enhances Malus domestica resistance to Valsa mali

Hongjia Yu; Chang Geng; Shang Liu; et al. PLANT PHYSIOLOGY 2026. doi:10.1093/plphys/kiag108

Other claims from this paper (6)

Intervention effect SyCD1 significantly enhanced resistance in multiple apple tissues.
Mechanism SyCD1 triggered jasmonic acid signaling.
Mechanism SyCD1 led to upregulation of MdSP1.
Mechanism SyCD1 led to upregulation of MdANK.
Mechanism SyCD1 directly interacted with MdSP1, strengthening immune responses.
Mechanism MdSP1 interacted with MdANK, enhancing apple resistance to V. mali.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Lentzea was enriched in the rhizosphere.

Taxon: Rehmannia glutinosaRehmannia glutinosat0
Interactor: LentzeaLentzeae0other
Outcome: Lentzeae0
Direction: enrichede0

Verbatim

e0
“several Actinobacteria with reported antagonistic or degradative capacities, including Streptomyces and Lentzea , were also enriched in the rhizosphere”
✓ located verbatim in the source · abstract, characters 1278–1429

t0
“Rehmannia glutinosa”
✓ located verbatim in the source · title, characters 91–110

Title

Multi-omics profiling reveals the rhizosphere microecological shifts in the first-cropping Rehmannia glutinosa as potential early triggers for continuous cropping obstacles

Shengnan Wang; Zimei Xie; Xiaomeng Zhao; et al. Industrial Crops and Products 2026. doi:10.1016/j.indcrop.2026.123199

Other claims from this paper (9)

Observation Phenolic acids accumulated early and persistently.
Observation Jasmonates accumulated early and persistently.
Observation Defensive metabolites showed a late pulse at harvest.
Observation The rhizosphere microbiome progressively restructured.
Observation Plectosphaerella became increasingly enriched across the season.
Observation Albifimbria became increasingly enriched across the season.
Observation Nematode trophic composition indicated a shift toward a fungal-dominated food web.
Observation Streptomyces was enriched in the rhizosphere.
Association Candidate allelochemicals were strongly associated with enriched fungal and bacterial taxa.

Pseudonocardiaceae 71 claims

71 claims