Taxillus 19 claims

genus · family Loranthaceae · green plant · NCBI Taxonomy ↗

4 spellings

Taxillus葉子 · CC0 · iNaturalist ↗

19 claims

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Observationobservedoriginal resultsimulated

Claim · model-written summary

Taxillus and Scurrula diverged during the climatic optimum in the middle Miocene.

Taxon: TaxillusTaxilluse5
Outcome: diverged during the climatic optimume5
Qualifier: middle Miocenee5

Verbatim

e5
“Taxillus and Scurrula diverged during the climatic optimum in the middle Miocene.”
✓ located verbatim in the source · abstract, characters 1758–1839

Title

Phylogeny, character evolution and historical biogeography of Scurrulinae (Loranthaceae): new insights into the circumscription of the genus Taxillus

Chi Toan Le; Limin Lu; Van Du Nguyen; et al. BMC Plant Biology 2024. doi:10.1186/s12870-024-05126-0

Other claims from this paper (6)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Taxillus, Scurrula and Schoepfia grouped in another clade.

Taxon: TaxillusTaxilluse0
Outcome: formed another cladee0

Verbatim

e0
“Taxillus (3 spp.) and Scurrula (1 sp.) in the Loranthaceae and Schoepfia (1 sp.) in the Schoepfiaceae formed another clade”
✓ located verbatim in the source · abstract, characters 816–938

Title

Comparative Analyses of Chloroplast Genomes for Parasitic Species of Santalales in the Light of Two Newly Sequenced Species, Taxillus nigrans and Scurrula parasitica

Ximing Yue; Ning Miao; Zilu Fan; et al. Genes 2023. doi:10.3390/genes14030560

Other claims from this paper (10)

Method / resource Chloroplast genomes of Taxillus nigrans and Scurrula parasitica were sequenced for the first time.
Observation The chloroplast genomes showed a quadripartite structure.
Observation The twelve Santalales species grouped into three phylogenetic clades.
Observation Viscum, Osyris and Champereia grouped in one clade.
Observation Erythropalum was the most distant third clade.
Observation Viscum and Taxillus were each monophyletic.
Observation Scurrula was sister to Taxillus.
Observation Chloroplast genomes differed in size and gene losses.
Observation Twelve species formed six categories based on chloroplast gene features.
Observation Most photosynthesis genes were retained across the twelve species.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Four chloroplast genomes ranged from 119,941 to 138,492 bp.

Taxon: Taxillus and PhacellariaTaxillusPhacellariat0
Outcome: chloroplast genomese0
Value: 119,941–138,492 bpe0

Verbatim

e0
“The chloroplast genomes of the four species were 119,941–138,492 bp in length”
✓ located verbatim in the source · abstract, characters 459–536

t0
“Taxillus and Phacellaria”
✓ located verbatim in the source · title, characters 55–79

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.

Taxon: TaxillusTaxilluse0
Gene: ndh genese0
Outcome: ndh genese0
Direction: loste0
Comparator: Nicotiana tabacume0

Verbatim

e0
“Compared with the chloroplast genome of the autotrophic plant Nicotiana tabacum, all of the ndh genes, three ribosomal protein genes, three tRNA genes and the infA gene were lost in the three Taxillus species”
✓ located verbatim in the source · abstract, characters 538–746

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three ribosomal protein genes were lost in Taxillus species.

Taxon: TaxillusTaxilluse0
Gene: ribosomal protein genese0
Outcome: ribosomal protein genese0
Direction: loste0
Value: threee0

Verbatim

e0
“three ribosomal protein genes, three tRNA genes and the infA gene were lost in the three Taxillus species”
✓ located verbatim in the source · abstract, characters 641–746

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three tRNA genes were lost in Taxillus species.

Taxon: TaxillusTaxilluse0
Gene: tRNA genese0
Outcome: tRNA genese0
Direction: loste0
Value: threee0

Verbatim

e0
“three tRNA genes and the infA gene were lost in the three Taxillus species”
✓ located verbatim in the source · abstract, characters 672–746

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The infA gene was lost in Taxillus species.

Taxon: TaxillusTaxilluse0
Gene: infA genee0
Outcome: infA genee0
Direction: loste0

Verbatim

e0
“the infA gene were lost in the three Taxillus species”
✓ located verbatim in the source · abstract, characters 693–746

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Candidate variable chloroplast regions were selected for species identification.

Taxon: Taxillus and PhacellariaTaxillusPhacellariae0
Outcome: candidate highly variable regionse0
Value: Severale0

Verbatim

e0
“Several candidate highly variable regions in the chloroplast genomes of Taxillus and Phacellaria species were selected for species identification study”
✓ located verbatim in the source · abstract, characters 1178–1329

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Observation Taxillus and Scurrula were closely related, supporting congeneric treatment.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Taxillus and Scurrula were closely related, supporting congeneric treatment.

Taxon: TaxillusTaxilluse0
Interactor: ScurrulaScurrulae0other
Outcome: closely relatede0

Verbatim

e0
“species of Taxillus and Scurrula were closely related and supported that Scurrula and Taxillus should be treated as congeneric”
✓ located verbatim in the source · abstract, characters 1371–1497

Title

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

Liwei Wu; Panhui Fan; Jianguo Zhou; et al. Genes 2023. doi:10.3390/genes14040943

Other claims from this paper (12)

Method / resource Four chloroplast genomes ranged from 119,941 to 138,492 bp.
Observation All ndh genes were lost in the three Taxillus species relative to Nicotiana tabacum.
Observation Three ribosomal protein genes were lost in Taxillus species.
Observation Three tRNA genes were lost in Taxillus species.
Observation The infA gene was lost in Taxillus species.
Observation The trnV-UAC gene was lost in P. rigidula.
Observation The ycf15 gene was lost in P. rigidula.
Observation Only ndhB remained among ndh genes in P. rigidula.
Association P. rigidula and host T. chinensis had low chloroplast-genome homology.
Observation No horizontal gene transfer was found between P. rigidula and host T. chinensis.
Method / resource Candidate variable chloroplast regions were selected for species identification.
Observation Phacellaria had a close phylogenetic relationship with Viscum.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Taxillus plastomes range from 121 to 123 kbp.

Taxon: TaxillusTaxilluse0
Outcome: plastomese0
Value: 121 to 123 kbpe0

Verbatim

e0
“The Taxillus plastomes ranged from 121 to 123 kbp and encoded 90-93 plastid genes”
✓ located verbatim in the source · abstract, characters 856–937

Title

Plastome variation and phylogeny of Taxillus (Loranthaceae)

Huei-Jiun Su; Shu-ling Liang; Daniel L. Nickrent PLoS ONE 2021. doi:10.1371/journal.pone.0256345

Other claims from this paper (5)

Observation Taxillus plastomes encode 90-93 plastid genes.
Observation Several genes were lost or pseudogenized in Taxillus and Scurrula plastomes.
Observation Plastome and rDNA trees were generally congruent, with discordance for T. chinensis.
Method / resource Variable plastome regions recovered the main complete-plastome clades.
Method / resource accD alone or with rbcL can identify Taxillus and support phylogeny.